Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AB1395_RS06995 Genome accession   NZ_CP161815
Coordinates   1382208..1383017 (-) Length   269 a.a.
NCBI ID   WP_218653507.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1377208..1388017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS06985 (AB1395_06985) smc 1377726..1381271 (-) 3546 WP_367783175.1 chromosome segregation protein SMC -
  AB1395_RS06990 (AB1395_06990) rnc 1381273..1381974 (-) 702 WP_104968252.1 ribonuclease III -
  AB1395_RS06995 (AB1395_06995) vicX 1382208..1383017 (-) 810 WP_218653507.1 MBL fold metallo-hydrolase Regulator
  AB1395_RS07000 (AB1395_07000) vicK 1383019..1384365 (-) 1347 WP_218653508.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AB1395_RS07005 (AB1395_07005) vicR 1384358..1385065 (-) 708 WP_104968255.1 response regulator YycF Regulator
  AB1395_RS07010 (AB1395_07010) - 1385305..1386090 (+) 786 WP_115130595.1 amino acid ABC transporter ATP-binding protein -
  AB1395_RS07015 (AB1395_07015) - 1386101..1386928 (+) 828 WP_367783176.1 transporter substrate-binding domain-containing protein -
  AB1395_RS07020 (AB1395_07020) - 1386947..1387642 (+) 696 WP_104968258.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30165.36 Da        Isoelectric Point: 6.1746

>NTDB_id=1022596 AB1395_RS06995 WP_218653507.1 1382208..1383017(-) (vicX) [Streptococcus pluranimalium strain SS-15]
MADKGFKYSILASGSTGNAFYLETPKKRLLIDAGLTGKKITSLLAEIDRRPEDLDAILITHEHSDHIKGVGVLARKYKLD
LYANEKTWEVMDAKNMLGKIDNSQKHIFSREKMMTFGDIDIESFGVSHDAVDPQFYRFMKDDKSFVMLTDTGYVSDRMAG
IVANADGYLIESNHDIEILRAGSYPWKTKQRILSDFGHLSNEAGAQAMIDTLGNRTKKIYLGHLSKENNIKELAHMTMES
NLMQADLGVNHDFKVLDTSPDTATPLVDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1022596 AB1395_RS06995 WP_218653507.1 1382208..1383017(-) (vicX) [Streptococcus pluranimalium strain SS-15]
GTGGCTGATAAAGGATTTAAATACAGTATTTTAGCTTCAGGGTCGACAGGTAATGCTTTTTATCTGGAGACACCAAAGAA
ACGTCTTTTGATTGATGCTGGATTGACTGGTAAGAAAATTACCAGTCTTTTAGCTGAAATTGATCGACGACCTGAGGATT
TAGATGCTATTTTGATTACACATGAGCATTCAGACCATATCAAAGGAGTTGGGGTTTTGGCTCGCAAGTACAAACTTGAC
TTGTATGCGAATGAAAAAACCTGGGAAGTTATGGATGCCAAAAATATGCTAGGTAAGATAGATAATTCACAGAAGCATAT
CTTTTCGCGCGAAAAAATGATGACTTTCGGAGATATTGATATCGAGTCTTTTGGCGTTAGTCATGATGCGGTAGATCCGC
AGTTTTATCGTTTTATGAAAGATGATAAAAGCTTTGTCATGTTAACTGACACGGGCTATGTTAGCGATCGTATGGCAGGG
ATTGTTGCCAATGCGGATGGTTATTTGATTGAATCTAACCATGATATTGAAATTCTCAGAGCGGGTTCCTATCCATGGAA
GACCAAACAAAGGATTCTTTCTGACTTTGGTCATTTGTCCAATGAGGCTGGTGCTCAGGCTATGATTGACACGCTTGGTA
ATCGTACTAAGAAGATTTATCTTGGGCATTTGAGTAAGGAAAACAATATCAAGGAGCTAGCTCATATGACCATGGAGTCA
AATCTGATGCAAGCTGACTTGGGTGTTAATCATGATTTCAAAGTATTGGATACCTCACCAGACACGGCGACGCCATTAGT
CGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.093

100

0.751

Multiple sequence alignment