Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   AB1395_RS01420 Genome accession   NZ_CP161815
Coordinates   267631..268677 (+) Length   348 a.a.
NCBI ID   WP_367783634.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262631..273677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS01405 (AB1395_01405) - 263886..265544 (+) 1659 WP_367783631.1 peptide ABC transporter substrate-binding protein -
  AB1395_RS01410 (AB1395_01410) - 265660..266574 (+) 915 WP_104967234.1 ABC transporter permease -
  AB1395_RS01415 (AB1395_01415) - 266585..267616 (+) 1032 WP_316606706.1 ABC transporter permease -
  AB1395_RS01420 (AB1395_01420) oppD 267631..268677 (+) 1047 WP_367783634.1 ABC transporter ATP-binding protein Regulator
  AB1395_RS01425 (AB1395_01425) amiF 268677..269612 (+) 936 WP_278024934.1 ABC transporter ATP-binding protein Regulator
  AB1395_RS01430 (AB1395_01430) - 269991..270434 (-) 444 WP_278024790.1 transposase -
  AB1395_RS01435 (AB1395_01435) - 270397..271158 (-) 762 WP_367783637.1 IS110 family transposase -
  AB1395_RS01440 (AB1395_01440) - 271353..272606 (-) 1254 WP_367783639.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38562.15 Da        Isoelectric Point: 4.9354

>NTDB_id=1022577 AB1395_RS01420 WP_367783634.1 267631..268677(+) (oppD) [Streptococcus pluranimalium strain SS-15]
MTQENILEVKNLHVDFQTYAGEVKAIREVNFELKKGETLAIVGESGSGKSVTTKTLMGLSAKNANISGEILFKNRNLNDL
KEEEWVKIRGNEIAMIFQDPMTSLDPTMKIGMQIAEPIMLHEKISKKEALDRALELMKSVGIPNAEEHINDYPHQWSGGM
RQRAVIAVALAGNPEILIADEPTTALDVTIQAQILNLMKDIQQKTSSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTAAGALQSIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPMFKVSDSHYAATWLL
DKRAPEVTPPPQILKRWAKWQEKYGGIN

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1022577 AB1395_RS01420 WP_367783634.1 267631..268677(+) (oppD) [Streptococcus pluranimalium strain SS-15]
ATGACACAAGAAAATATCTTAGAAGTTAAAAATCTTCATGTTGATTTCCAAACTTATGCTGGTGAAGTCAAAGCTATTCG
TGAAGTTAATTTTGAACTGAAAAAAGGTGAAACACTTGCAATAGTAGGTGAGTCAGGTTCAGGTAAATCAGTGACAACCA
AGACACTTATGGGCTTGTCTGCAAAGAATGCCAATATTTCAGGTGAGATTCTTTTTAAAAATCGTAATCTCAATGATTTA
AAAGAAGAAGAATGGGTTAAAATCCGTGGAAATGAAATTGCGATGATTTTCCAAGATCCGATGACTAGTCTTGATCCAAC
CATGAAGATTGGTATGCAAATCGCAGAACCGATTATGCTACATGAAAAGATTTCGAAAAAAGAAGCTCTTGATCGTGCAC
TTGAGCTTATGAAGAGTGTCGGTATCCCGAATGCTGAGGAACATATCAACGATTACCCTCACCAGTGGTCAGGTGGAATG
CGCCAACGTGCCGTCATCGCTGTTGCGCTAGCTGGAAATCCTGAAATATTAATTGCTGATGAACCAACGACTGCTCTTGA
TGTAACGATTCAAGCTCAGATTTTAAATTTAATGAAAGATATTCAGCAGAAAACATCAAGTTCGATTATCTTTATCACTC
ACGACTTGGGTGTTGTTGCTGGTATGGCGGATCGTGTTGCTGTTATGTATGCTGGTAAAATCGTTGAATATGGGACTGTT
GATGAAGTTTTCTACAACCCACAACATCCTTACACTTGGGGACTTTTAAATTCAATGCCAACAACAGATACAGCAGCTGG
AGCCCTCCAGTCTATTCCTGGAACACCACCGGATTTGTTGAATCCTCCAAAAGGAGATGCCTTTGCAGCTCGTAATGAAT
TTGCATTGGACATTGATCATGAAGAAGAACCACCGATGTTTAAAGTATCAGATAGTCATTACGCCGCAACATGGCTCTTA
GATAAAAGAGCACCAGAGGTGACCCCTCCACCACAAATCCTAAAACGATGGGCCAAATGGCAAGAAAAATATGGAGGGAT
TAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

81.739

99.138

0.81
  amiE Streptococcus salivarius strain HSISS4

55.758

94.828

0.529
  amiE Streptococcus thermophilus LMG 18311

55.152

94.828

0.523
  amiE Streptococcus thermophilus LMD-9

55.152

94.828

0.523

Multiple sequence alignment