Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   AB1395_RS01425 Genome accession   NZ_CP161815
Coordinates   268677..269612 (+) Length   311 a.a.
NCBI ID   WP_278024934.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SS-15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 263677..274612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS01405 (AB1395_01405) - 263886..265544 (+) 1659 WP_367783631.1 peptide ABC transporter substrate-binding protein -
  AB1395_RS01410 (AB1395_01410) - 265660..266574 (+) 915 WP_104967234.1 ABC transporter permease -
  AB1395_RS01415 (AB1395_01415) - 266585..267616 (+) 1032 WP_316606706.1 ABC transporter permease -
  AB1395_RS01420 (AB1395_01420) oppD 267631..268677 (+) 1047 WP_367783634.1 ABC transporter ATP-binding protein Regulator
  AB1395_RS01425 (AB1395_01425) amiF 268677..269612 (+) 936 WP_278024934.1 ABC transporter ATP-binding protein Regulator
  AB1395_RS01430 (AB1395_01430) - 269991..270434 (-) 444 WP_278024790.1 transposase -
  AB1395_RS01435 (AB1395_01435) - 270397..271158 (-) 762 WP_367783637.1 IS110 family transposase -
  AB1395_RS01440 (AB1395_01440) - 271353..272606 (-) 1254 WP_367783639.1 ISL3 family transposase -
  AB1395_RS01445 (AB1395_01445) - 272743..273689 (-) 947 Protein_244 IS30 family transposase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35210.09 Da        Isoelectric Point: 6.3745

>NTDB_id=1022578 AB1395_RS01425 WP_278024934.1 268677..269612(+) (amiF) [Streptococcus pluranimalium strain SS-15]
MENNKKKLVELKNVSLTFNEGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINDGEIIFNGEKVSHL
KGKAQHNFRKQAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVSSKEERDEKVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPEKERARVHQVYDPTAELDGQERTMHEITPGHFVLATEEEAQLYKEQLQK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1022578 AB1395_RS01425 WP_278024934.1 268677..269612(+) (amiF) [Streptococcus pluranimalium strain SS-15]
ATGGAAAATAACAAAAAAAAATTAGTTGAACTAAAAAATGTTTCTCTTACGTTTAACGAAGGGAAATCAAACGAAGTTAA
AGCCATTAATAATGTTAGCTTTGACATCTATGAAGGTGAAGTTTTTGGTTTAGTTGGTGAGTCTGGTTCAGGTAAAACAA
CCGTTGGTCGTGCTATTTTGAAACTGTATGATATTAACGACGGAGAAATTATCTTTAATGGTGAAAAAGTCTCACATTTA
AAAGGTAAAGCACAACATAATTTCCGTAAACAAGCTCAAATGATTTTTCAAGATCCACAAGCAAGTCTTAACGGGCGAAT
GAAAATCCGTGATATTGTTGCTGAAGGATTGGACATCCATAAGTTGGTTTCATCCAAGGAAGAACGTGATGAAAAAGTTC
AACACCTTCTTGATTTAGTTGGTTTAAATAAAGATCACTTAACACGTTATCCTCATGAGTTTTCTGGTGGACAACGTCAG
CGTATCGGTATTGCCCGTGCTCTTGCTGTTGAACCGAAATTTATCATTGCCGATGAACCAATTTCAGCGTTGGATGTTTC
TATTCAAGCTCAAGTTGTTAATTTGATGCAAAAATTACAACGTGAGCAAGGCTTGACATATCTCTTTATTGCCCACGATT
TATCAATGGTTAAATATATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGAACATCTGAAGAT
GTTTATAATAATCCGATTCATCCTTATACAAAGAGTTTATTGTCAGCTATTCCAGAACCGGATCCTGAAAAAGAACGTGC
CCGTGTTCATCAAGTCTATGATCCAACAGCAGAATTGGATGGACAAGAACGCACTATGCATGAAATCACACCAGGTCATT
TTGTTCTTGCTACAGAAGAAGAAGCGCAGCTCTATAAAGAACAATTGCAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.545

99.035

0.54
  amiF Streptococcus thermophilus LMG 18311

54.221

99.035

0.537
  amiF Streptococcus salivarius strain HSISS4

54.221

99.035

0.537

Multiple sequence alignment