Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   DQN61_RS00680 Genome accession   NZ_LS483391
Coordinates   104549..104833 (+) Length   94 a.a.
NCBI ID   WP_002987779.1    Uniprot ID   A0A0H2USY2
Organism   Streptococcus pyogenes strain NCTC8320     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99549..109833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN61_RS00655 (NCTC8320_00134) - 101496..101861 (+) 366 WP_002986560.1 DUF1033 family protein -
  DQN61_RS00660 (NCTC8320_00135) comGA 101953..102891 (+) 939 WP_002986557.1 competence type IV pilus ATPase ComGA Machinery gene
  DQN61_RS00665 (NCTC8320_00136) comGB 102827..103861 (+) 1035 WP_226976794.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQN61_RS00670 (NCTC8320_00137) comGC 103863..104189 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  DQN61_RS00675 (NCTC8320_00138) comGD 104164..104592 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQN61_RS00680 (NCTC8320_00139) comGE 104549..104833 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQN61_RS00685 (NCTC8320_00140) comGF 104826..105260 (+) 435 WP_002986542.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQN61_RS00690 (NCTC8320_00141) comGG 105244..105570 (+) 327 WP_002986539.1 competence type IV pilus minor pilin ComGG -
  DQN61_RS00695 (NCTC8320_00142) comGH 105668..106621 (+) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  DQN61_RS00700 (NCTC8320_00143) - 106680..107876 (+) 1197 WP_002986533.1 acetate kinase -
  DQN61_RS00705 - 108063..108371 (+) 309 WP_011017251.1 hypothetical protein -
  DQN61_RS00710 (NCTC8320_00144) proC 108454..109224 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10672.62 Da        Isoelectric Point: 8.9043

>NTDB_id=1022501 DQN61_RS00680 WP_002987779.1 104549..104833(+) (comGE) [Streptococcus pyogenes strain NCTC8320]
MGIIKKQVKAYIALESMIATGILFSIVILVLSSLQQSQAALTYYRKQQEKLNLALMAVQTRTKEMTLNGCHITILRTDRY
ISIHDDEGEVMKIE

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1022501 DQN61_RS00680 WP_002987779.1 104549..104833(+) (comGE) [Streptococcus pyogenes strain NCTC8320]
GTGGGAATTATCAAAAAACAAGTCAAAGCTTACATAGCCCTTGAAAGTATGATCGCAACAGGCATCCTCTTTAGTATTGT
CATTCTCGTCTTAAGCAGTTTACAGCAGAGTCAGGCTGCTCTAACGTACTATCGAAAGCAGCAAGAAAAGCTTAATCTAG
CCTTGATGGCAGTACAAACTAGAACTAAAGAGATGACATTGAATGGTTGTCATATTACTATTTTACGTACGGATAGATAT
ATTAGTATTCACGATGACGAAGGAGAAGTGATGAAGATTGAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(12-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2USY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Lactococcus lactis subsp. cremoris KW2

38.298

100

0.383