Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V8V89_RS12240 Genome accession   NZ_CP161808
Coordinates   2438521..2440320 (-) Length   599 a.a.
NCBI ID   WP_003563017.1    Uniprot ID   A0AAP4JKV8
Organism   Lacticaseibacillus paracasei strain B1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433521..2445320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V89_RS12215 - 2434796..2435140 (+) 345 WP_003563007.1 hypothetical protein -
  V8V89_RS12220 - 2435214..2435933 (+) 720 WP_003563009.1 metal ABC transporter ATP-binding protein -
  V8V89_RS12225 - 2435930..2436727 (+) 798 WP_003563011.1 metal ABC transporter permease -
  V8V89_RS12230 - 2436795..2437646 (-) 852 WP_003563013.1 metallophosphoesterase -
  V8V89_RS12235 - 2437643..2438524 (-) 882 WP_004562160.1 NAD(P)-dependent oxidoreductase -
  V8V89_RS12240 pepF 2438521..2440320 (-) 1800 WP_003563017.1 oligoendopeptidase F Regulator
  V8V89_RS12245 - 2440449..2441543 (+) 1095 WP_003563019.1 LCP family protein -
  V8V89_RS12250 brnQ 2441694..2443073 (-) 1380 WP_003563021.1 branched-chain amino acid transport system II carrier protein -
  V8V89_RS12255 - 2443815..2444501 (-) 687 WP_003563024.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67251.42 Da        Isoelectric Point: 5.8465

>NTDB_id=1022500 V8V89_RS12240 WP_003563017.1 2438521..2440320(-) (pepF) [Lacticaseibacillus paracasei strain B1]
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNAAYQAMNAKAESLAADLASQLAFMDPEILAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTAAESLIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKA
HNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQA
KDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQAQFADFEHWIHQQDQHGEPLTA
TSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKY
AIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1022500 V8V89_RS12240 WP_003563017.1 2438521..2440320(-) (pepF) [Lacticaseibacillus paracasei strain B1]
ATGCAACATTTACCGGCACGCGCAGAAGTCCCTACCGAATTGACATGGGATCTCACGACTATTTATCCAGATGACAAGGC
TTGGCAAGTTGACTTTGAAGCCGTTCGTCAGCAAGCAAAGGAAGCGGCAGCACTTAAGGGTACATTGGGCAAGTCGCCTG
AAGCACTCGTCGCAGGTATCAAAGCCGTTCTCGCGGTGTTCAGACGCTTTGAAAAGGTTTATGTCTATTCCAGCTTGAAA
AGTGATCAAGACACTGGCAATGCCGCGTATCAAGCCATGAATGCCAAAGCAGAAAGTCTGGCGGCTGATCTTGCCAGCCA
ATTAGCCTTCATGGATCCGGAAATTCTGGCGATTCCAGCCGATCAGTTGACCGCTTGGCGCGATACCGAAAGCCTCAAAC
CCTATGGTCACTTTATTGATGCCATCACTGTGAATCGCCAACACGTCCTGACCACAGCGGCGGAGTCATTAATTGCTAGT
GCTGGGGATGCGCTGAATGCCAGTCATGCAACCTTTAATGTGTTGAACAACTCCGACCTGCAATTTGGCTTTGTTGAAAA
TGAAGACGGTGAGACCGTGCAACTCAGCAATGGTTTGTATGGTCAACTCATTCGGTCAACAAATCGCAAGCTGCGGAAAG
ACGCGTTTGAGGCTTTGCTACGGGCATATGAAAGTCTTAAGAATACCTTTGCTCAAACATTGAGTGGCCAGATCAAAGCT
CATAACTTCAATGCTTTAGCGCATCATTATCCCGATGCTCGCGCTGCTGCAATGGCAAGTAACCACATCCCCGAAAGTGT
CTACACAACACTGCTTGATCAAGTCAACGCTCACTTGCCATTACTACATCGCTATATTGCCTTACGTAAAAAGATTCTGA
ATGTCGATCAACTGCATATGTATGATATCTACACACCGCTGACCGGACGTCCGCCATTGAGTTTCACCCTCGATCAGGCA
AAAGACGAAGCCTTAAAGGCATTGGCTCCGCTGGGAAATGATTATTTAGATCATATGCGGGAAATCTTTAATAATCGTTA
CATTGATGTCGTCGAAAATAAGGGCAAACGGTCCGGCGCTTATTCCGGTGGTGCGTATGACACCAATCCGTTCATTTTAC
TGAACTGGCACGATGCCGTTGATGAATTGTACACTTTGGTTCACGAAACTGGTCACAGTGTGCACAGCTGGTATACTCGT
CATCACCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTCGCAGAAATTGCCTCAACAACCAATGAAAATTTATTGAC
GGACTACTTCCTAAAAAACACCAATGATCCTAAAGTTCGGGCGTACATTTTGAATTACTATCTAGACGGCTTCAAAGGAA
CGGTCTTCCGTCAGGCTCAATTTGCCGACTTTGAACATTGGATTCATCAACAAGACCAGCATGGTGAACCATTGACGGCT
ACCAGCATGTCCTCCTATTATGCGGATCTCAATGCCCGTTATTACGGACCAGATGTTGCACGTGATCCTGAAATCGCCTT
TGAATGGGCTCGTATTCCACATTTCTATTACAATTATTATGTTTACCAGTACGCAACTGGTTTTGCCGCTGCCTCGACTT
TGGCCGCTGGCATCAGCGGTGGCGAACCAGAGGCGGTTTCCCGCTATATCGGCTACTTGAAATCTGGCAGTTCCAAGTAT
GCGATTGATACAATGAAAGCGGCCGGCGTTGATATGACCAAGCCAGATTATTTAGAAGCCGCCTTCTCACTATTTGAACA
ACGACTCGCTGAATTAGAAAAAATTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.165

0.513

Multiple sequence alignment