Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V8V89_RS11010 | Genome accession | NZ_CP161808 |
| Coordinates | 2191877..2192473 (+) | Length | 198 a.a. |
| NCBI ID | WP_003568462.1 | Uniprot ID | A0A0C9PXZ6 |
| Organism | Lacticaseibacillus paracasei strain B1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2186877..2197473
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V8V89_RS10990 | gyrA | 2187254..2189875 (+) | 2622 | WP_003581640.1 | DNA gyrase subunit A | - |
| V8V89_RS10995 | deoC | 2189980..2190684 (-) | 705 | WP_003568456.1 | deoxyribose-phosphate aldolase | - |
| V8V89_RS11000 | ssb | 2190991..2191422 (+) | 432 | WP_003568458.1 | single-stranded DNA-binding protein | - |
| V8V89_RS11005 | rpsF | 2191550..2191846 (+) | 297 | WP_003568460.1 | 30S ribosomal protein S6 | - |
| V8V89_RS11010 | ssb | 2191877..2192473 (+) | 597 | WP_003568462.1 | single-stranded DNA-binding protein | Machinery gene |
| V8V89_RS11015 | rpsR | 2192560..2192796 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| V8V89_RS11020 | - | 2193238..2194716 (+) | 1479 | WP_003568469.1 | cytochrome ubiquinol oxidase subunit I | - |
| V8V89_RS11025 | cydB | 2194709..2195728 (+) | 1020 | WP_003568540.1 | cytochrome d ubiquinol oxidase subunit II | - |
| V8V89_RS11030 | - | 2195755..2195949 (+) | 195 | WP_003568474.1 | hypothetical protein | - |
| V8V89_RS11035 | - | 2196022..2196615 (-) | 594 | WP_003572821.1 | TMEM175 family protein | - |
| V8V89_RS11040 | - | 2197012..2197407 (-) | 396 | WP_016386485.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21138.87 Da Isoelectric Point: 4.9056
>NTDB_id=1022498 V8V89_RS11010 WP_003568462.1 2191877..2192473(+) (ssb) [Lacticaseibacillus paracasei strain B1]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 597 bp
>NTDB_id=1022498 V8V89_RS11010 WP_003568462.1 2191877..2192473(+) (ssb) [Lacticaseibacillus paracasei strain B1]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCTATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCTATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.296 |
100 |
0.596 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.485 |
100 |
0.485 |