Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABVF20_RS09500 Genome accession   NZ_CP160999
Coordinates   2186889..2187695 (-) Length   268 a.a.
NCBI ID   WP_100152195.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer07     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2181889..2192695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF20_RS09480 (ABVF20_10670) - 2182806..2183204 (+) 399 WP_100139677.1 DUF350 domain-containing protein -
  ABVF20_RS09485 (ABVF20_10675) - 2183232..2184263 (+) 1032 WP_267408299.1 SPFH domain-containing protein -
  ABVF20_RS09490 (ABVF20_10680) - 2184272..2186134 (+) 1863 WP_370389640.1 DUF4178 domain-containing protein -
  ABVF20_RS09495 (ABVF20_10685) speD 2186134..2186499 (+) 366 WP_367577749.1 adenosylmethionine decarboxylase -
  ABVF20_RS09500 (ABVF20_10690) comL 2186889..2187695 (-) 807 WP_100152195.1 outer membrane protein assembly factor BamD Machinery gene
  ABVF20_RS09505 (ABVF20_10695) rluD 2187694..2188818 (+) 1125 WP_367577750.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABVF20_RS09510 (ABVF20_10700) pgeF 2188831..2189625 (+) 795 WP_370389641.1 peptidoglycan editing factor PgeF -
  ABVF20_RS09515 (ABVF20_10705) - 2189710..2189859 (-) 150 WP_267391427.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31068.89 Da        Isoelectric Point: 6.0347

>NTDB_id=1022270 ABVF20_RS09500 WP_100152195.1 2186889..2187695(-) (comL) [Snodgrassella alvi strain Acer07]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQSRFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVNKLAKQDWSDRDPKANREAYTTFAQLVEYFPQS
KYAADARDKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQYQNTPNVEEALAIMVSAYEKLGEQKLSDDTKRV
LAQNFPNSPYLQSPWQDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1022270 ABVF20_RS09500 WP_100152195.1 2186889..2187695(-) (comL) [Snodgrassella alvi strain Acer07]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTTTTACTGAGTGCCTGTGCCAGCACAAGTACGGTCGATAAGGATTC
CCAGATTACTCAGGACTGGTCTGTTCAGCGTCTGTATAATGAAGCACACGATGAGCTGATGCATCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGTCTCGTTTCCCGTATGGTTCGTATGCGGAGCAGGCTCAGCTTGACACAGCATAT
GCTTATTATAAAGATGATGAGAATGATAAAGCGCTGGCGGCAATTGAACAGTTTCAGCGTTTGTATCCGCAACACCCCAA
TATGGATTACGCTTTGTATTTGAAAGCACTGATTCAGCTGAATGAGGATAAATCCTTTGTTAATAAGCTGGCCAAACAAG
ATTGGTCTGACCGCGACCCGAAAGCTAATCGGGAAGCTTATACCACTTTTGCACAACTAGTAGAATATTTCCCTCAAAGT
AAATATGCTGCCGATGCTCGCGATAAGATGCAGAAACTACTGGATGCGCTTGGCGGGAATGAGCTTTCAGTAGCACGTTA
TTATATGAAACGCGGTGCATGGCTGGCGGCTGTTGGCCGTGCACAGACGGTTATTTCTCAATACCAGAATACGCCTAATG
TGGAGGAAGCGCTGGCTATTATGGTTTCTGCGTATGAAAAACTGGGTGAGCAGAAGCTCAGTGATGATACCAAGCGTGTT
CTGGCACAGAATTTTCCAAATAGCCCATATCTGCAATCTCCGTGGCAGGATCACAATGCCATTCCATGGTGGCGTTATTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

68.165

99.627

0.679
  comL Neisseria gonorrhoeae MS11

67.79

99.627

0.675

Multiple sequence alignment