Detailed information NTG1022258

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABVF20_RS04945
• Genome accession: NZ_CP160999
• Coordinates: 1125049..1126521 (-)
• Length: 490 a.a.
• NCBI ID: WP_267390617.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer07
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1120049..1131521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVF20_RS04925 (ABVF20_04295)	amgK	1122180..1123184 (+)	1005	WP_370389948.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABVF20_RS04930 (ABVF20_04300)	-	1123238..1123552 (-)	315	WP_367578482.1	hypothetical protein	-
ABVF20_RS04935 (ABVF20_04305)	-	1123573..1124217 (-)	645	WP_367578483.1	hypothetical protein	-
ABVF20_RS04940 (ABVF20_04315)	-	1124288..1125049 (-)	762	WP_267390616.1	class I SAM-dependent methyltransferase	-
ABVF20_RS04945 (ABVF20_04320)	pilR	1125049..1126521 (-)	1473	WP_267390617.1	sigma-54 dependent transcriptional regulator	Regulator
ABVF20_RS04950 (ABVF20_04325)	-	1126514..1128088 (-)	1575	WP_367578486.1	ATP-binding protein	-
ABVF20_RS04955 (ABVF20_04330)	parC	1128095..1130413 (-)	2319	WP_367578487.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 54531.12 Da
• Isoelectric Point: 6.0374

>NTDB_id=1022258 ABVF20_RS04945 WP_267390617.1 1125049..1126521(-) (pilR) [Snodgrassella alvi strain Acer07]
MNSQVELKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHAFSLVLTDMRMPDGSGLEIVDYITEHNLD
IPIAVITAYGNAVQAVQALKNGAFDYLQKPITLAQLRTLVKSVLTINHSSDTDTITKAATTTKQTEVKSQNVSEPGRGNQ
SAAQERLLGHSPLIAEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSARKDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADSDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRLICATHKDLNALVESGQF
RQDLFYRLNVVSITMPPLRELRDDLPELIQVLLQRILRDETMTLSPAAEQALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIQSLSFDNQRNLSVDSVRNSAGENPARTDFQFGHTQIQDYLDDVERHILQQALAQTRYNRTQAAKLLGISFRSM
RYRMERLGIA

Nucleotide

• Length: 1473 bp

>NTDB_id=1022258 ABVF20_RS04945 WP_267390617.1 1125049..1126521(-) (pilR) [Snodgrassella alvi strain Acer07]
ATGAATAGTCAGGTAGAATTAAAAAAGCCAGTGCTGGTAATAGATGATGAAGCTGATATTCGTGATTTAATGGAATTAAC
CCTGATAAAAATGGGTTTATCTGTCCAGACCGCTGCCGGAGTGGCTGAAGCCAAAAAAGCATTACGTAATCATGCTTTCT
CTTTGGTACTTACTGATATGCGCATGCCAGACGGATCTGGTCTGGAAATTGTAGATTATATAACCGAACACAATCTGGAT
ATTCCGATTGCTGTGATTACTGCTTACGGTAATGCAGTGCAAGCAGTGCAGGCACTAAAAAATGGTGCTTTTGATTATCT
GCAAAAACCCATTACTCTGGCACAACTACGCACATTAGTTAAATCTGTGCTGACAATCAACCATAGCTCTGATACCGACA
CCATCACTAAAGCAGCTACAACCACTAAACAAACTGAAGTGAAATCCCAGAATGTTTCTGAGCCCGGTAGAGGGAACCAA
AGTGCTGCTCAAGAGCGACTGCTTGGTCACTCCCCTTTAATTGCTGAAGTGCGACAATTAATAAGCAAACTGGCTAAATC
CAATGTACCCGTCTATATTGCTGGGGAATCCGGTAGTGGAAAAGAGCAAGCAGCACGCAGTATTCATGAACAATCAGCTC
GTAAAGATAAAGCATTTGTTGCAGTCAATTGCGGGGCGATTCCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGGAGTTTTACCGGCGCAGACAGTGACAGAGCAGGATTTTTTCAGCATGCAGACGGTGGAACATTATTTTTGGATGA
AGTGGCTGATTTGCCATTATCCATGCAGGTAAAGCTTTTGCGTGCCATTCAGGAACGAGCTGTTCGCCGGATTGGTGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTCTTATCTGTGCTACTCATAAAGACCTGAATGCTTTGGTAGAATCGGGACAATTT
CGGCAGGATTTGTTTTACCGTCTAAATGTGGTTTCTATAACCATGCCCCCCTTACGTGAATTACGTGATGATTTACCAGA
ACTGATTCAGGTTTTGTTGCAACGTATTCTACGTGATGAAACCATGACCCTGAGCCCGGCAGCTGAGCAAGCTTTATTGC
AATATAGCTATCCCGGCAATTTCCGCGAGCTGGAAAATATATTAGAACGAGCAATTGCTTTATCAAAAAATCATATTATC
GAAGTTGATGATTTACAGATTCAAAGTCTCTCATTTGATAATCAGCGTAATTTATCAGTAGATAGTGTCCGTAATTCTGC
CGGGGAAAATCCCGCAAGGACAGATTTTCAGTTTGGTCACACCCAGATTCAGGACTATCTCGACGATGTAGAACGTCATA
TTCTGCAGCAGGCGCTGGCACAAACCCGTTATAACCGTACACAAGCGGCAAAACTATTGGGAATCAGCTTTAGATCAATG
CGTTATCGGATGGAACGATTGGGTATTGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (447-486)

• Response regulator receiver domain (Response_reg) (11-120)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	48.56	99.184	0.482
pilR	Acinetobacter baumannii strain A118	42.149	98.776	0.416