Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AB2N10_RS13405 Genome accession   NZ_CP160906
Coordinates   2910069..2910941 (-) Length   290 a.a.
NCBI ID   WP_369433957.1    Uniprot ID   -
Organism   Psychromonas sp. MME1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2905069..2915941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2N10_RS13395 mltF 2907596..2909520 (+) 1925 Protein_2590 membrane-bound lytic murein transglycosylase MltF -
  AB2N10_RS13400 tadA 2909542..2910069 (-) 528 WP_354622870.1 tRNA adenosine(34) deaminase TadA -
  AB2N10_RS13405 pilD 2910069..2910941 (-) 873 WP_369433957.1 A24 family peptidase Machinery gene
  AB2N10_RS13410 ndk 2910972..2911406 (-) 435 WP_369433958.1 nucleoside-diphosphate kinase -
  AB2N10_RS13415 - 2911483..2912361 (+) 879 WP_354622873.1 endonuclease/exonuclease/phosphatase family protein -
  AB2N10_RS13435 orn 2912864..2913403 (-) 540 WP_369433959.1 oligoribonuclease -
  AB2N10_RS13440 rsgA 2913507..2914550 (+) 1044 WP_354622876.1 small ribosomal subunit biogenesis GTPase RsgA -
  AB2N10_RS13445 asd 2914597..2915457 (+) 861 WP_354622877.1 archaetidylserine decarboxylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32435.60 Da        Isoelectric Point: 7.1054

>NTDB_id=1022239 AB2N10_RS13405 WP_369433957.1 2910069..2910941(-) (pilD) [Psychromonas sp. MME1]
MSELLNLMQQQPSLLYAFVTILGVLVGSFLNVVIYRLPVMMEREWKRDCAEFFPDANLKVEAETFNLVVPRSRCPQCDHL
IGSAENIPLLSWLWQKGRCKHCACKISKRYPSIELLTGILSLCVAYVIPFGWPLLFALLFTWVLIALTFIDFDTMLLPDQ
LTLPLLWFALLININGTFASLSDAVLGAAFGYLSLWSIYWVFKLLTGKEGMGYGDFKLLAALGAWFGWQALPLIILLSSC
AGAVIGIAAIVASKDKQSRPMPFGPYLAIAGWVYLVYGDSLTHLYYSLVL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1022239 AB2N10_RS13405 WP_369433957.1 2910069..2910941(-) (pilD) [Psychromonas sp. MME1]
ATGTCAGAATTACTTAATTTAATGCAGCAACAGCCGAGTCTGCTATACGCTTTTGTCACCATACTAGGGGTCTTAGTTGG
TTCATTTTTGAATGTAGTGATTTATCGCTTACCTGTGATGATGGAAAGAGAGTGGAAAAGAGATTGTGCTGAATTTTTTC
CTGATGCCAATTTAAAAGTCGAAGCTGAAACATTTAATTTAGTTGTTCCTCGTTCCCGTTGTCCACAATGTGACCATTTA
ATTGGCTCGGCAGAGAATATTCCTTTATTAAGTTGGTTGTGGCAAAAGGGGCGTTGTAAACATTGTGCCTGTAAAATAAG
CAAAAGATACCCAAGTATTGAGTTGTTAACGGGCATTTTATCTCTTTGTGTTGCCTATGTGATCCCTTTTGGTTGGCCAT
TACTTTTTGCTCTGTTATTTACTTGGGTCTTGATTGCATTAACCTTTATTGATTTTGATACCATGTTATTGCCAGATCAA
TTAACACTGCCATTATTATGGTTTGCCCTGTTAATCAATATAAATGGCACCTTTGCTAGCTTAAGCGATGCGGTACTTGG
TGCTGCCTTTGGTTATTTAAGTTTATGGTCTATATATTGGGTGTTTAAACTATTAACCGGTAAAGAAGGAATGGGTTATG
GTGATTTTAAATTGTTAGCTGCATTGGGGGCTTGGTTTGGATGGCAGGCGTTGCCATTGATTATTTTATTATCCTCCTGT
GCAGGTGCGGTGATTGGAATTGCTGCTATTGTTGCCTCTAAAGACAAACAAAGCCGCCCAATGCCCTTTGGTCCTTACCT
TGCCATAGCTGGTTGGGTTTATCTTGTCTATGGCGATAGTTTAACGCATTTATATTATTCACTGGTTTTATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.986

97.931

0.548
  pilD Vibrio campbellii strain DS40M4

53.659

98.966

0.531
  pilD Acinetobacter nosocomialis M2

49.825

98.276

0.49
  pilD Acinetobacter baumannii D1279779

49.474

98.276

0.486
  pilD Neisseria gonorrhoeae MS11

50.575

90

0.455

Multiple sequence alignment