Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQM64_RS03955 Genome accession   NZ_LS483387
Coordinates   719543..720139 (+) Length   198 a.a.
NCBI ID   WP_000966735.1    Uniprot ID   Q3K1U0
Organism   Streptococcus agalactiae strain NCTC8187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714543..725139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM64_RS03940 (NCTC8187_00769) tpiA 715727..716485 (+) 759 WP_000087883.1 triose-phosphate isomerase -
  DQM64_RS03945 (NCTC8187_00770) - 716662..717354 (+) 693 WP_000240135.1 phosphoglycerate mutase -
  DQM64_RS03950 (NCTC8187_00771) pbp2b 717483..719528 (+) 2046 WP_000934666.1 penicillin-binding protein PBP2B -
  DQM64_RS03955 (NCTC8187_00772) recR 719543..720139 (+) 597 WP_000966735.1 recombination mediator RecR Machinery gene
  DQM64_RS03960 (NCTC8187_00773) - 720280..721326 (+) 1047 WP_000032513.1 D-alanine--D-alanine ligase -
  DQM64_RS03965 (NCTC8187_00774) murF 721473..722840 (+) 1368 WP_000777517.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQM64_RS03970 (NCTC8187_00775) - 723027..724247 (+) 1221 WP_000793481.1 OFA family MFS transporter -
  DQM64_RS03975 (NCTC8187_00776) - 724376..725062 (+) 687 WP_000569006.1 YwaF family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21619.82 Da        Isoelectric Point: 4.5632

>NTDB_id=1022221 DQM64_RS03955 WP_000966735.1 719543..720139(+) (recR) [Streptococcus agalactiae strain NCTC8187]
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTIGMSDEDVNEFAKNLLAAKRELTYCSVCGNLTDDDPCLICTDKTRDQS
VILVVEDSKDVSAMEKIQEYNGLYHVLHGLISPMNGISPDDINLKSLITRLMDGQVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1022221 DQM64_RS03955 WP_000966735.1 719543..720139(+) (recR) [Streptococcus agalactiae strain NCTC8187]
ATGCTTTACCCAACACCAATTGCTAAATTGATTGACAGCTTTTCAAAATTACCGGGTATAGGTACTAAAACAGCAACACG
TTTAGCTTTTTACACCATTGGTATGAGTGATGAAGATGTTAATGAATTTGCTAAGAATTTATTAGCTGCTAAGCGGGAAT
TAACCTATTGTTCTGTTTGTGGTAATTTGACTGATGATGATCCTTGCTTAATTTGTACAGATAAGACGCGTGACCAGTCT
GTTATCTTGGTTGTTGAAGATAGTAAAGATGTGTCAGCTATGGAAAAAATTCAAGAGTATAATGGTTTGTATCATGTCTT
ACATGGCTTAATTTCACCTATGAATGGTATTAGCCCTGATGACATTAATTTGAAAAGTTTAATTACTCGATTGATGGATG
GTCAGGTGACAGAAGTTATTGTTGCTACCAATGCGACTGCTGATGGTGAAGCTACATCAATGTATATTTCACGAGTCTTA
AAACCAGCTGGTATCAAAGTGACACGATTAGCGAGAGGTTTAGCTGTTGGTTCAGATATCGAATATGCAGATGAAGTAAC
CTTGCTTCGAGCAATCGAAAATCGTACAGAGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485