Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DQM82_RS07270 Genome accession   NZ_LS483386
Coordinates   1409873..1410514 (-) Length   213 a.a.
NCBI ID   WP_002983671.1    Uniprot ID   A0A0H2UW05
Organism   Streptococcus pyogenes strain NCTC13742     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404873..1415514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM82_RS07245 (NCTC13742_01435) comFA/cflA 1404959..1406284 (-) 1326 WP_023611937.1 DEAD/DEAH box helicase Machinery gene
  DQM82_RS07250 (NCTC13742_01436) - 1406340..1406972 (+) 633 WP_032465539.1 YigZ family protein -
  DQM82_RS07255 (NCTC13742_01437) cysK 1407100..1408041 (+) 942 WP_011888673.1 cysteine synthase A -
  DQM82_RS07260 (NCTC13742_01438) - 1408059..1408436 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  DQM82_RS07265 (NCTC13742_01439) - 1408436..1409836 (-) 1401 WP_023611922.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DQM82_RS07270 (NCTC13742_01440) vraR 1409873..1410514 (-) 642 WP_002983671.1 response regulator transcription factor Regulator
  DQM82_RS07275 (NCTC13742_01441) - 1410507..1411511 (-) 1005 WP_002991890.1 sensor histidine kinase -
  DQM82_RS07280 (NCTC13742_01442) liaF 1411508..1412200 (-) 693 WP_011054833.1 cell wall-active antibiotics response protein LiaF -
  DQM82_RS07285 (NCTC13742_01443) pknB 1412323..1414221 (-) 1899 WP_012560855.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  DQM82_RS07290 (NCTC13742_01444) - 1414218..1414958 (-) 741 WP_002983660.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23751.43 Da        Isoelectric Point: 5.1641

>NTDB_id=1022142 DQM82_RS07270 WP_002983671.1 1409873..1410514(-) (vraR) [Streptococcus pyogenes strain NCTC13742]
MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASNGREGVDLALALKPDVLVMDLVMPELGGVEATLEVLKKWKEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1022142 DQM82_RS07270 WP_002983671.1 1409873..1410514(-) (vraR) [Streptococcus pyogenes strain NCTC13742]
ATGAGTAAGATAAAAGTGATATTGGTCGATGATCATGAAATGGTCCGCATGGGACTCAAGAGTTTTTTGAATTTACAAGC
TGATATTGATGTCGTTGGTGAGGCCTCTAATGGACGTGAAGGGGTTGATTTGGCATTGGCTTTGAAGCCAGATGTTTTGG
TTATGGATCTAGTGATGCCAGAGTTAGGCGGTGTTGAGGCAACTTTAGAAGTCCTAAAAAAATGGAAAGAGGCTAAGGTA
CTTGTGTTAACTTCCTATCTAGATAATGAAAAGATATACCCTGTCATTGATGCAGGAGCGAAGGGTTATATGTTAAAAAC
ATCGAGTGCGGCTGAAATTTTAAATGCCATTCGCAAGGTTTCAAAGGGAGAGTTAGCTATTGAAACAGAAGTTGACAAAA
AAATTAAGGCGCATGATCAACACCCTGACTTGCATGAGGAACTAACAGCGCGTGAGTATGATATTTTACACCTTTTAGCT
AAAGGGTATGATAATCAGACCATCGCTGATGAACTCTTTATTTCCTTAAAAACCGTCAAAACACATGTGTCCAATATTCT
AGCCAAGTTAGAAGTTGATGACCGAACCCAAGCGGTTGTCTATGCTTTTCGACACCATTTAGTCCCCCAAGACGATAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UW05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.913

96.714

0.512
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.385