Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABZM97_RS12425 Genome accession   NZ_CP160797
Coordinates   2558697..2560427 (-) Length   576 a.a.
NCBI ID   WP_087990666.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2553697..2565427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS12405 (ABZM97_12405) - 2554519..2555637 (+) 1119 WP_087990664.1 NADH-dependent flavin oxidoreductase -
  ABZM97_RS12410 (ABZM97_12410) - 2555854..2556033 (-) 180 WP_087990814.1 hypothetical protein -
  ABZM97_RS12415 (ABZM97_12415) spo0A 2556163..2556966 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ABZM97_RS12420 (ABZM97_12420) spoIVB 2557242..2558522 (-) 1281 WP_202327226.1 SpoIVB peptidase -
  ABZM97_RS12425 (ABZM97_12425) recN 2558697..2560427 (-) 1731 WP_087990666.1 DNA repair protein RecN Machinery gene
  ABZM97_RS12430 (ABZM97_12430) argR 2560465..2560914 (-) 450 WP_087990667.1 arginine repressor ArgR -
  ABZM97_RS12435 (ABZM97_12435) - 2561011..2561856 (-) 846 WP_087990668.1 TlyA family RNA methyltransferase -
  ABZM97_RS12440 (ABZM97_12440) dxs 2561853..2563754 (-) 1902 WP_087990669.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABZM97_RS12445 (ABZM97_12445) - 2563935..2564825 (-) 891 WP_202327220.1 polyprenyl synthetase family protein -
  ABZM97_RS12450 (ABZM97_12450) - 2564815..2565069 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64666.45 Da        Isoelectric Point: 4.7405

>NTDB_id=1022030 ABZM97_RS12425 WP_087990666.1 2558697..2560427(-) (recN) [Bacillus vallismortis strain BL-01]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFDVC
AEQGIDVSDEMIIMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEAESALQ
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSENVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGASV
EDILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAANVSKIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKI
RTAPRNEEAPIVNGQPVQMTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTHVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLRQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1022030 ABZM97_RS12425 WP_087990666.1 2558697..2560427(-) (recN) [Bacillus vallismortis strain BL-01]
TTGTTAGCTGAACTATCCATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAGTCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGCTCATCCGAAT
TTGTCAGATATGGGGAGACAAAAGCCGAGCTTGAAGGGCTGTTTCTATTGGAGAGCGGCCATCCCGTTTTTGACGTATGC
GCTGAGCAGGGAATTGACGTTTCTGACGAAATGATCATCATGAGAAGGGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
AGTTAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCACCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGCGGAAAGCGCGCTTCAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTTAAAAAGCTAAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGTCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCGGCTAAGCTCGAGCTTAATGAAGATGAGCAGCTTC
AGGAAGAGCGCCAGCAAATTTCAAATTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGCGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCCGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAATGTTTCGAACTCCTACTATCTTCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAACTTGAAT
ATGATCCGGAACGCCTGAACTATATTGAGACGCGCCTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCATCTGTT
GAGGATATCTTGGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCGT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTTTCAAAAATCCGCAAAGCATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTCTACATGGAAAAATCAACTTTTGATACGGAATTTAAGATC
AGAACAGCGCCCCGAAATGAGGAGGCGCCGATTGTAAACGGCCAGCCTGTTCAGATGACTGAACAAGGGATTGATTTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAACCGCTGAAATCCCTTTCGAAAGTCGCTTCCGGAGGAGAGCTGTCACGGG
TGATGCTAGCTATTAAAAGCATTTTTTCCTCTCAACAGGATGTGACGTCGATTATATTCGATGAGGTTGATACCGGTGTA
AGCGGCAGAGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCGCAAGTGCTGTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCAGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACAACACATGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGTATGATTGCAGGAGTCGAAGTAACAGACTTAACGAAACGC
CATGCAAAAGAACTTTTAAGACAAGCGGACCAAGTCAAAACAACGGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

96.528

100

0.965

Multiple sequence alignment