Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABZM97_RS12415 Genome accession   NZ_CP160797
Coordinates   2556163..2556966 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2551163..2561966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS12390 (ABZM97_12390) - 2551182..2552045 (-) 864 WP_087990661.1 3-hydroxybutyryl-CoA dehydrogenase -
  ABZM97_RS12395 (ABZM97_12395) - 2552071..2553252 (-) 1182 WP_087990662.1 acetyl-CoA C-acetyltransferase -
  ABZM97_RS12400 (ABZM97_12400) - 2553380..2554111 (-) 732 WP_087990663.1 glycerophosphodiester phosphodiesterase -
  ABZM97_RS12405 (ABZM97_12405) - 2554519..2555637 (+) 1119 WP_087990664.1 NADH-dependent flavin oxidoreductase -
  ABZM97_RS12410 (ABZM97_12410) - 2555854..2556033 (-) 180 WP_087990814.1 hypothetical protein -
  ABZM97_RS12415 (ABZM97_12415) spo0A 2556163..2556966 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ABZM97_RS12420 (ABZM97_12420) spoIVB 2557242..2558522 (-) 1281 WP_202327226.1 SpoIVB peptidase -
  ABZM97_RS12425 (ABZM97_12425) recN 2558697..2560427 (-) 1731 WP_087990666.1 DNA repair protein RecN Machinery gene
  ABZM97_RS12430 (ABZM97_12430) argR 2560465..2560914 (-) 450 WP_087990667.1 arginine repressor ArgR -
  ABZM97_RS12435 (ABZM97_12435) - 2561011..2561856 (-) 846 WP_087990668.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1022029 ABZM97_RS12415 WP_003226427.1 2556163..2556966(-) (spo0A) [Bacillus vallismortis strain BL-01]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1022029 ABZM97_RS12415 WP_003226427.1 2556163..2556966(-) (spo0A) [Bacillus vallismortis strain BL-01]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATTGAAGGACAGGA
AGACATGGAAGTCATCGGTGTTGCTTATAATGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTGGACGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAGAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCTTCTTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTTGGACATATCCGCCAGGTCAGCGGGAATGCAAGCAGCGTGACGCATCGCGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATTACAAGCATT
ATCCATGAAATCGGCGTCCCAGCGCATATTAAAGGGTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTTCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCAATCCGCCACGCGATTGAAGTCGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGTTATACAGTC
AGCATGACAAAAGCTAAGCCTACTAACAGCGAATTCATTGCGATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment