Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABZM97_RS00580 Genome accession   NZ_CP160797
Coordinates   106168..107544 (+) Length   458 a.a.
NCBI ID   WP_087991673.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101168..112544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS00560 (ABZM97_00560) ctsR 101521..101985 (+) 465 WP_087991669.1 transcriptional regulator CtsR -
  ABZM97_RS00565 (ABZM97_00565) mcsA 101999..102556 (+) 558 WP_087991670.1 protein-arginine kinase activator protein McsA -
  ABZM97_RS00570 (ABZM97_00570) - 102556..103647 (+) 1092 WP_087991671.1 protein arginine kinase -
  ABZM97_RS00575 (ABZM97_00575) clpC 103644..106076 (+) 2433 WP_087991672.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ABZM97_RS00580 (ABZM97_00580) radA 106168..107544 (+) 1377 WP_087991673.1 DNA repair protein RadA Machinery gene
  ABZM97_RS00585 (ABZM97_00585) disA 107548..108630 (+) 1083 WP_087991674.1 DNA integrity scanning diadenylate cyclase DisA -
  ABZM97_RS00590 (ABZM97_00590) - 108747..109847 (+) 1101 WP_087991675.1 PIN/TRAM domain-containing protein -
  ABZM97_RS00595 (ABZM97_00595) ispD 109862..110560 (+) 699 WP_253268768.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABZM97_RS00600 (ABZM97_00600) ispF 110553..111029 (+) 477 WP_087991677.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49455.97 Da        Isoelectric Point: 8.2392

>NTDB_id=1021995 ABZM97_RS00580 WP_087991673.1 106168..107544(+) (radA) [Bacillus vallismortis strain BL-01]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSDEPRVKTKLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSSNSVLYISGEESVKQTKLRADRLGINSPSLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1021995 ABZM97_RS00580 WP_087991673.1 106168..107544(+) (radA) [Bacillus vallismortis strain BL-01]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGTTATGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAGGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACTGTACAGAAACCTTCACCTATTACATCAATCGAAACATCAGATGAACCCCGCGTCAAAACCAAGCTTGGCGAATTT
AACAGGGTACTCGGCGGAGGTGTCGTTAAAGGCTCACTTGTTTTAATCGGCGGCGATCCCGGTATCGGAAAGTCAACGTT
ATTACTGCAAGTTTCTGCTCAATTATCAGATTCATCGAACAGTGTGCTGTACATTTCGGGAGAAGAATCGGTCAAACAAA
CGAAACTTAGAGCAGACCGTCTCGGCATTAATAGTCCGTCGCTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACCAAAGCGATATCACATCGGC
TCCCGGCAGCGTGTCACAGGTCAGAGAATGTACGGCTGAGCTGATGAAAATCGCCAAAACAAAAGGCATTCCGATTTTTA
TCGTAGGACACGTGACAAAAGAAGGGTCTATTGCAGGGCCGAGATTGTTGGAGCATATGGTTGACACTGTTTTATATTTT
GAAGGAGAACGTCACCATACCTTCCGTATTTTGCGGGCTGTAAAAAACCGTTTTGGTTCTACAAACGAAATGGGTATTTT
TGAAATGCGCGAAGAGGGGCTCACCGAGGTTTTGAATCCTTCAGAAATTTTCTTGGAAGAACGCTCAGCGGGATCTGCAG
GCTCGAGTATAACTGCCTCTATGGAAGGCACAAGGCCGATTCTCGTTGAAATCCAGGCGCTTATCTCGCCGACAAGCTTT
GGCAATCCGCGGCGTATGGCAACGGGAATAGACCATAACAGGGTTTCGCTGTTAATGGCCGTGTTAGAAAAAAGAGTTGG
GCTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCCGGCGGCGTAAAGCTTGATGAACCGGCAATTGACCTTGCCA
TTGCGATCAGTATCGCGTCAAGCTTTAGAGATACACCTCCAAATCCTGCCGATTGTTTTATAGGTGAAGTGGGATTAACC
GGAGAAGTCCGGCGGGTTTCAAGAATTGAACAGCGTGTGAAGGAAGCTGCTAAGCTTGGTTTTAAACGCATGATCATACC
CGCGGCAAATCTGGATGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624

Multiple sequence alignment