Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQM87_RS03425 Genome accession   NZ_LS483384
Coordinates   651317..651913 (+) Length   198 a.a.
NCBI ID   WP_047235761.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 646317..656913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM87_RS03395 (NCTC13743_00670) - 646424..647359 (-) 936 WP_111704995.1 dihydroorotate oxidase -
  DQM87_RS03400 (NCTC13743_00671) - 647598..648293 (+) 696 WP_002983928.1 phosphoglycerate mutase -
  DQM87_RS03405 (NCTC13743_00672) - 648400..648921 (+) 522 WP_002983930.1 transcription repressor NadR -
  DQM87_RS03410 (NCTC13743_00673) - 649082..649624 (+) 543 WP_002989140.1 hypothetical protein -
  DQM87_RS03415 (NCTC13743_00674) - 649748..650527 (+) 780 WP_014407680.1 formate/nitrite transporter family protein -
  DQM87_RS09845 - 651088..651270 (+) 183 WP_011888786.1 penicillin-binding protein -
  DQM87_RS03425 (NCTC13743_00675) recR 651317..651913 (+) 597 WP_047235761.1 recombination mediator RecR Machinery gene
  DQM87_RS03430 (NCTC13743_00676) - 652014..653060 (+) 1047 WP_002994369.1 D-alanine--D-alanine ligase -
  DQM87_RS03435 (NCTC13743_00677) - 653259..654626 (+) 1368 WP_111704996.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQM87_RS03440 (NCTC13743_00678) - 654730..655425 (+) 696 WP_111704997.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21663.83 Da        Isoelectric Point: 4.8889

>NTDB_id=1021909 DQM87_RS03425 WP_047235761.1 651317..651913(+) (recR) [Streptococcus pyogenes strain NCTC13743]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYRGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1021909 DQM87_RS03425 WP_047235761.1 651317..651913(+) (recR) [Streptococcus pyogenes strain NCTC13743]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAATTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCGTGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.282

98.485

0.505