Detailed information NTG1021690

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB1O87_RS22220
• Genome accession: NZ_CP160622
• Coordinates: 4441602..4442402 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP2445
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4436602..4447402

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1O87_RS22185	gspH	4436758..4437273 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
AB1O87_RS22190	gspI	4437270..4437635 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB1O87_RS22195	gspJ	4437632..4438228 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
AB1O87_RS22200	gspK	4438225..4439211 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
AB1O87_RS22205	gspL	4439198..4440391 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
AB1O87_RS22210	-	4440384..4440869 (+)	486	WP_004151943.1	type II secretion system protein M	-
AB1O87_RS22215	-	4440859..4441605 (+)	747	WP_004145897.1	type II secretion system protein N	-
AB1O87_RS22220	pilD	4441602..4442402 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AB1O87_RS22225	hrpB	4442450..4444879 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
AB1O87_RS22230	thpR	4444952..4445488 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AB1O87_RS22235	sfsA	4445488..4446204 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB1O87_RS22240	dksA	4446367..4446822 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1021690 AB1O87_RS22220 WP_002888947.1 4441602..4442402(+) (pilD) [Klebsiella pneumoniae strain KP2445]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1021690 AB1O87_RS22220 WP_002888947.1 4441602..4442402(+) (pilD) [Klebsiella pneumoniae strain KP2445]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425