Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB1H94_RS07210 Genome accession   NZ_CP160620
Coordinates   1571411..1572046 (+) Length   211 a.a.
NCBI ID   WP_104925955.1    Uniprot ID   -
Organism   Pseudomonas fulva strain NY4814     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1566411..1577046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1H94_RS07190 (AB1H94_07190) - 1566766..1567698 (+) 933 WP_027914346.1 ABC transporter ATP-binding protein -
  AB1H94_RS07195 (AB1H94_07195) - 1567695..1568474 (+) 780 WP_023533108.1 ABC transporter permease -
  AB1H94_RS07200 (AB1H94_07200) - 1568358..1568990 (-) 633 WP_367239262.1 DUF2062 domain-containing protein -
  AB1H94_RS07205 (AB1H94_07205) comA 1569133..1571349 (+) 2217 WP_140174562.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB1H94_RS07210 (AB1H94_07210) exbB 1571411..1572046 (+) 636 WP_104925955.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB1H94_RS07215 (AB1H94_07215) - 1572043..1572477 (+) 435 WP_028687688.1 biopolymer transporter ExbD -
  AB1H94_RS07220 (AB1H94_07220) lpxK 1572477..1573478 (+) 1002 WP_104925956.1 tetraacyldisaccharide 4'-kinase -
  AB1H94_RS07225 (AB1H94_07225) - 1573521..1573706 (+) 186 WP_003247142.1 Trm112 family protein -
  AB1H94_RS07230 (AB1H94_07230) kdsB 1573703..1574464 (+) 762 WP_023533083.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB1H94_RS07235 (AB1H94_07235) - 1574464..1574928 (+) 465 WP_027914351.1 low molecular weight protein-tyrosine-phosphatase -
  AB1H94_RS07240 (AB1H94_07240) murB 1574925..1575944 (+) 1020 WP_104925957.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22817.09 Da        Isoelectric Point: 7.3616

>NTDB_id=1021654 AB1H94_RS07210 WP_104925955.1 1571411..1572046(+) (exbB) [Pseudomonas fulva strain NY4814]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMAANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1021654 AB1H94_RS07210 WP_104925955.1 1571411..1572046(+) (exbB) [Pseudomonas fulva strain NY4814]
GTGTGGGAATTGGTCAAGTCAGGCGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCAGTCCGCCTCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCGCCCCTGGGGGAGATCCTCGCGGCAGGGCTGGCCAAC
TCGCGTCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACGCTGGGCACCATTGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCGTTCATGGGGTCGCAGATGGCCGCCAACGCCTCGGTGCTGGCGGGCGGTATTTCAAAGGCCCTGGTAACCACCGCA
GCCGGGCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAACTGGTGGAAGTGATTCAGGGGGACCGCGAGGTGGAAGTGGCGGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment