Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | DQM54_RS06235 | Genome accession | NZ_LS483375 |
| Coordinates | 1259446..1260558 (-) | Length | 370 a.a. |
| NCBI ID | WP_008809216.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain NCTC3165 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1254446..1265558
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM54_RS06200 (NCTC3165_01235) | mnmE | 1254678..1256051 (+) | 1374 | WP_111723782.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| DQM54_RS06205 (NCTC3165_01236) | - | 1256201..1256770 (-) | 570 | WP_111723783.1 | TlpA family protein disulfide reductase | - |
| DQM54_RS06210 (NCTC3165_01237) | - | 1257210..1257908 (-) | 699 | WP_008809213.1 | LrgB family protein | - |
| DQM54_RS06215 (NCTC3165_01238) | - | 1257901..1258281 (-) | 381 | WP_111723784.1 | CidA/LrgA family protein | - |
| DQM54_RS06230 (NCTC3165_01241) | - | 1259055..1259393 (-) | 339 | WP_012000664.1 | metal-sulfur cluster assembly factor | - |
| DQM54_RS06235 (NCTC3165_01242) | rpoS | 1259446..1260558 (-) | 1113 | WP_008809216.1 | RNA polymerase sigma factor RpoD | Regulator |
| DQM54_RS06240 (NCTC3165_01243) | dnaG | 1260561..1262342 (-) | 1782 | WP_302053683.1 | DNA primase | - |
| DQM54_RS06245 (NCTC3165_01244) | mscL | 1262549..1262929 (+) | 381 | WP_045503293.1 | large conductance mechanosensitive channel protein MscL | - |
| DQM54_RS06250 (NCTC3165_01245) | rpsU | 1263038..1263214 (-) | 177 | WP_000048054.1 | 30S ribosomal protein S21 | - |
| DQM54_RS06255 (NCTC3165_01246) | - | 1263341..1264024 (-) | 684 | WP_046165485.1 | DUF4956 domain-containing protein | - |
| DQM54_RS06260 (NCTC3165_01247) | - | 1264035..1264766 (-) | 732 | WP_111723786.1 | polyphosphate polymerase domain-containing protein | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42405.08 Da Isoelectric Point: 4.5140
>NTDB_id=1021287 DQM54_RS06235 WP_008809216.1 1259446..1260558(-) (rpoS) [Streptococcus gordonii strain NCTC3165]
MATKQKEVTTFDVQVAEFIRNHKKTGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
MATKQKEVTTFDVQVAEFIRNHKKTGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
Nucleotide
Download Length: 1113 bp
>NTDB_id=1021287 DQM54_RS06235 WP_008809216.1 1259446..1260558(-) (rpoS) [Streptococcus gordonii strain NCTC3165]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAAACTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATCTATTGCAAC
GTATCCAAGATGCAGGGATCTCTATCACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTGACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTACTTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTCGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCAAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACCTA
TGCAACTTGGTGGATCCGTCAGGCCATTACACGTGCGATCGCTGACCAAGCTAGAACAATCCGAATTCCAGTTCACATGG
TAGAAACGATTAACAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTAGGTCAAGATCCAACACCAGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTTAAGATTGCTCAGGAGCCAGTTTCTCTGGAAACACC
TATCGGTGAAGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTATACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTCTTCAATGTGACCCGTGAACGCATCCGCCAAAT
CGAAGCTAAAGCCCTACGTAAACTACGCCACCCAAGTCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAAACTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATCTATTGCAAC
GTATCCAAGATGCAGGGATCTCTATCACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTGACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTACTTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTCGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCAAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACCTA
TGCAACTTGGTGGATCCGTCAGGCCATTACACGTGCGATCGCTGACCAAGCTAGAACAATCCGAATTCCAGTTCACATGG
TAGAAACGATTAACAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTAGGTCAAGATCCAACACCAGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTTAAGATTGCTCAGGAGCCAGTTTCTCTGGAAACACC
TATCGGTGAAGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTATACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTCTTCAATGTGACCCGTGAACGCATCCGCCAAAT
CGAAGCTAAAGCCCTACGTAAACTACGCCACCCAAGTCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.918 |
78.919 |
0.37 |