Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB1S54_RS04230 Genome accession   NZ_CP160446
Coordinates   905439..906542 (-) Length   367 a.a.
NCBI ID   WP_004918085.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RA-NM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 900439..911542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1S54_RS04200 - 901406..901546 (+) 141 WP_015345427.1 hypothetical protein -
  AB1S54_RS04205 comF 901634..902287 (-) 654 WP_004918078.1 ComF family protein Machinery gene
  AB1S54_RS04215 - 902509..903060 (-) 552 WP_004918080.1 hypothetical protein -
  AB1S54_RS04220 - 903115..903765 (-) 651 WP_004918082.1 HD domain-containing protein -
  AB1S54_RS04225 gdhA 903897..905255 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  AB1S54_RS04230 dprA 905439..906542 (-) 1104 WP_004918085.1 DNA-processing protein DprA Machinery gene
  AB1S54_RS04235 - 906545..906922 (-) 378 WP_014938004.1 group III truncated hemoglobin -
  AB1S54_RS04240 ruvC 906933..907487 (-) 555 WP_014938003.1 crossover junction endodeoxyribonuclease RuvC -
  AB1S54_RS04245 - 907540..908013 (-) 474 WP_038693795.1 Lrp/AsnC family transcriptional regulator -
  AB1S54_RS04250 - 908361..911291 (+) 2931 WP_004918095.1 SusC/RagA family TonB-linked outer membrane protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 40491.51 Da        Isoelectric Point: 6.6968

>NTDB_id=1021159 AB1S54_RS04230 WP_004918085.1 905439..906542(-) (dprA) [Riemerella anatipestifer strain RA-NM]
MVNAEEILYSIALRRSPLVGDVIFASLVSEVGSAKEAWGLSKLELRKISGVGKQIASNIGDKNLLKFAEKEIEFCIKNEI
KIHLRHLNQLPRLLGECYDAPAILFQKGDYEDTANNISIVGTRNATAYGKSFLEDLIVQFKNKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIIYPSKHKILAEEILNNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPSVEVSLTPVQEPVYDI
IKEVNDISLDDLSEKLNQPISKVFPVLLELELLGLIRANSGRRYSII

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1021159 AB1S54_RS04230 WP_004918085.1 905439..906542(-) (dprA) [Riemerella anatipestifer strain RA-NM]
ATGGTAAATGCGGAAGAAATTTTATATTCTATTGCTCTTCGGCGAAGCCCATTGGTGGGAGATGTTATATTTGCAAGTTT
GGTTAGCGAGGTAGGCTCTGCTAAGGAAGCGTGGGGTCTGTCTAAGTTGGAATTACGGAAAATATCAGGCGTAGGTAAGC
AAATTGCCTCAAACATCGGAGATAAAAATCTTTTAAAATTTGCTGAAAAGGAAATAGAGTTCTGCATTAAAAACGAAATA
AAAATCCACTTACGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCTGCTATTCTTTTTCAAAA
AGGAGATTATGAGGATACCGCTAATAATATTAGTATTGTTGGGACGAGAAATGCCACTGCTTATGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAAATAAAAATATTCAAGTCATTAGTGGTTTAGCTTTAGGTACAGACGGAATAGCTCAT
CAAGAGGCTTTAAAAAACAATATAAAAACTTCAGCGGTTTTAGCACACGGTTTACATATCATTTATCCGTCCAAACATAA
AATTCTCGCTGAAGAAATATTAAATAATGGTGGAGCTTTGTTTTCTGAATTCTGCTCTGATGAAAAGCCAGATAGAGAAC
ATTTTTTGCAAAGAAATCGTATTGTGGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCAGGAGGCTCT
ATTAGCACGGCGAGTTTTGCTAATCAGTATAATAGAGAAGTGTATGCTTTGGCAGGGCGTCTTACAGATAAATATAGCCA
AGGTTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTCAGTTGAAGTTTCTTTAACTCCTGTTCAGGAGCCTGTTTATGATATT
ATTAAGGAGGTTAATGATATTTCATTAGATGACTTGTCAGAAAAATTAAATCAACCCATATCTAAAGTGTTTCCTGTTTT
ATTGGAATTAGAATTATTGGGGTTGATAAGGGCAAATTCTGGGAGGAGATATTCTATCATTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(309-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1

Multiple sequence alignment