Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | AB1S54_RS04205 | Genome accession | NZ_CP160446 |
| Coordinates | 901634..902287 (-) | Length | 217 a.a. |
| NCBI ID | WP_004918078.1 | Uniprot ID | A0AAP6LJM8 |
| Organism | Riemerella anatipestifer strain RA-NM | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 896634..907287
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB1S54_RS04185 | - | 897454..898536 (-) | 1083 | WP_004918073.1 | serine hydrolase | - |
| AB1S54_RS04190 | - | 898647..900302 (-) | 1656 | WP_004918074.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| AB1S54_RS04195 | - | 900350..901324 (-) | 975 | WP_004918076.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| AB1S54_RS04200 | - | 901406..901546 (+) | 141 | WP_015345427.1 | hypothetical protein | - |
| AB1S54_RS04205 | comF | 901634..902287 (-) | 654 | WP_004918078.1 | ComF family protein | Machinery gene |
| AB1S54_RS04215 | - | 902509..903060 (-) | 552 | WP_004918080.1 | hypothetical protein | - |
| AB1S54_RS04220 | - | 903115..903765 (-) | 651 | WP_004918082.1 | HD domain-containing protein | - |
| AB1S54_RS04225 | gdhA | 903897..905255 (-) | 1359 | WP_014938006.1 | NADP-specific glutamate dehydrogenase | - |
| AB1S54_RS04230 | dprA | 905439..906542 (-) | 1104 | WP_004918085.1 | DNA-processing protein DprA | Machinery gene |
| AB1S54_RS04235 | - | 906545..906922 (-) | 378 | WP_014938004.1 | group III truncated hemoglobin | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25339.46 Da Isoelectric Point: 9.4150
>NTDB_id=1021158 AB1S54_RS04205 WP_004918078.1 901634..902287(-) (comF) [Riemerella anatipestifer strain RA-NM]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
Nucleotide
Download Length: 654 bp
>NTDB_id=1021158 AB1S54_RS04205 WP_004918078.1 901634..902287(-) (comF) [Riemerella anatipestifer strain RA-NM]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
100 |
100 |
1 |