Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABZP31_RS13165 Genome accession   NZ_CP160437
Coordinates   2798776..2799411 (+) Length   211 a.a.
NCBI ID   WP_367156824.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2793776..2804411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS13155 (ABZP31_13155) - 2795911..2796720 (-) 810 WP_248133726.1 NAD-dependent epimerase/dehydratase family protein -
  ABZP31_RS13160 (ABZP31_13160) recG 2796744..2798789 (+) 2046 WP_248133727.1 ATP-dependent DNA helicase RecG -
  ABZP31_RS13165 (ABZP31_13165) comF 2798776..2799411 (+) 636 WP_367156824.1 ComF family protein Machinery gene
  ABZP31_RS13170 (ABZP31_13170) - 2799408..2799809 (-) 402 WP_005024410.1 NUDIX domain-containing protein -
  ABZP31_RS13175 (ABZP31_13175) - 2799819..2800400 (-) 582 WP_005404596.1 TIGR00730 family Rossman fold protein -
  ABZP31_RS13180 (ABZP31_13180) - 2800565..2801578 (+) 1014 WP_005024408.1 magnesium and cobalt transport protein CorA -
  ABZP31_RS13185 (ABZP31_13185) - 2801613..2801903 (-) 291 WP_005024406.1 lipid asymmetry maintenance protein MlaB -
  ABZP31_RS13190 (ABZP31_13190) - 2801927..2802565 (-) 639 WP_005024404.1 phospholipid-binding protein MlaC -
  ABZP31_RS13195 (ABZP31_13195) - 2802583..2803245 (-) 663 WP_005024401.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABZP31_RS13200 (ABZP31_13200) mlaE 2803245..2804021 (-) 777 WP_005024399.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24324.42 Da        Isoelectric Point: 8.9584

>NTDB_id=1021138 ABZP31_RS13165 WP_367156824.1 2798776..2799411(+) (comF) [Acinetobacter sp. FL]
MPMFNPSSLLRPISRLLPCPLCSSSLQMQHGVCHDCWEQLPWYRQTVERQELNIHVAYGYQYPIDRIIQQFKYEQQLNYQ
QLLTASILTLRLPKVQAIVPMPISTERLIERGYNQSLVIAKILARELNVPVWQPVIRLAQHSQKGLSRLERLNQIEMQFQ
PILTERRRYRRVLMLDDVVTTGSSLSALAQALTQLGCQHIFAACIAAAETA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1021138 ABZP31_RS13165 WP_367156824.1 2798776..2799411(+) (comF) [Acinetobacter sp. FL]
ATGCCTATGTTTAACCCATCTTCTTTACTCAGACCTATCTCACGGCTACTACCCTGCCCGCTTTGTAGCAGCAGTTTGCA
AATGCAGCATGGGGTTTGTCATGATTGCTGGGAACAGCTGCCTTGGTATCGGCAGACTGTAGAACGACAAGAATTAAACA
TTCATGTTGCCTATGGCTATCAATATCCAATAGATCGTATTATCCAGCAGTTTAAATATGAGCAGCAGTTAAACTATCAG
CAGTTACTGACTGCATCGATACTAACCCTCAGGTTACCTAAAGTTCAGGCCATTGTGCCTATGCCCATATCAACCGAACG
TTTAATTGAACGCGGCTATAATCAGTCACTGGTCATTGCAAAAATTCTAGCCCGTGAGCTGAATGTTCCGGTCTGGCAAC
CTGTAATTCGGCTGGCTCAGCATTCGCAAAAAGGCTTATCGCGACTCGAACGTCTGAACCAGATTGAAATGCAATTTCAG
CCGATCCTCACCGAACGCCGGCGTTACCGCCGGGTATTAATGCTAGACGATGTAGTGACTACAGGCAGCTCACTTTCGGC
CTTGGCTCAAGCCCTGACCCAGCTGGGCTGCCAGCATATTTTTGCTGCGTGTATTGCAGCCGCAGAAACAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.398

100

0.564
  comF Acinetobacter baumannii D1279779

56.398

100

0.564

Multiple sequence alignment