Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABZP31_RS05515 Genome accession   NZ_CP160437
Coordinates   1210601..1210987 (+) Length   128 a.a.
NCBI ID   WP_005025576.1    Uniprot ID   A0A062BTN5
Organism   Acinetobacter sp. FL     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1205601..1215987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS05485 (ABZP31_05485) kdsB 1206446..1207207 (+) 762 WP_248134274.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABZP31_RS05490 (ABZP31_05490) - 1207225..1208208 (+) 984 WP_248134272.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  ABZP31_RS05495 (ABZP31_05495) - 1208227..1208568 (+) 342 WP_005014707.1 PilZ domain-containing protein -
  ABZP31_RS05500 (ABZP31_05500) - 1208612..1209385 (+) 774 WP_248134270.1 TatD family hydrolase -
  ABZP31_RS05505 (ABZP31_05505) - 1209425..1210033 (+) 609 WP_101162145.1 TetR/AcrR family transcriptional regulator -
  ABZP31_RS05510 (ABZP31_05510) - 1210048..1210611 (+) 564 WP_101162146.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABZP31_RS05515 (ABZP31_05515) xcpV 1210601..1210987 (+) 387 WP_005025576.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABZP31_RS05520 (ABZP31_05520) xcpW 1210984..1211607 (+) 624 WP_248134268.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABZP31_RS05525 (ABZP31_05525) gspK 1211641..1212585 (+) 945 WP_248134266.1 type II secretion system minor pseudopilin GspK -
  ABZP31_RS05530 (ABZP31_05530) - 1212682..1213278 (+) 597 WP_101162150.1 6-carboxytetrahydropterin synthase -
  ABZP31_RS05535 (ABZP31_05535) ung 1213323..1214036 (+) 714 WP_101162151.1 uracil-DNA glycosylase -
  ABZP31_RS05540 (ABZP31_05540) - 1214033..1215157 (+) 1125 WP_111280930.1 enoyl-CoA hydratase/isomerase family protein -
  ABZP31_RS05545 (ABZP31_05545) tadA 1215161..1215652 (+) 492 WP_248134263.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14078.22 Da        Isoelectric Point: 7.0119

>NTDB_id=1021126 ABZP31_RS05515 WP_005025576.1 1210601..1210987(+) (xcpV) [Acinetobacter sp. FL]
MKPKGFTLLEVMVALAIFATAAVALTKVAMQYTQATSNAILRTKAQFVGMNEIALMEMNQAWLQGTESKQVTSQGETWQI
DKQAASTISPNVQRIEVQISLFNTEQGKVENGIATLVFFNHPLKENTS

Nucleotide


Download         Length: 387 bp        

>NTDB_id=1021126 ABZP31_RS05515 WP_005025576.1 1210601..1210987(+) (xcpV) [Acinetobacter sp. FL]
GTGAAACCTAAAGGCTTTACATTACTTGAAGTTATGGTTGCGCTAGCAATTTTTGCGACAGCAGCAGTTGCCCTGACAAA
AGTAGCCATGCAATATACACAAGCCACCTCAAATGCAATTTTAAGGACAAAAGCGCAATTTGTGGGTATGAATGAAATTG
CTCTCATGGAAATGAATCAGGCGTGGCTACAGGGAACAGAGTCTAAACAGGTAACATCTCAAGGTGAAACCTGGCAAATT
GACAAACAGGCAGCTTCCACCATCAGTCCAAATGTACAGCGTATTGAAGTACAAATTAGTCTGTTTAATACAGAGCAGGG
TAAGGTTGAAAATGGAATTGCGACCTTGGTGTTTTTTAATCATCCACTCAAAGAAAATACTTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BTN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.032

96.875

0.766

Multiple sequence alignment