Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABZP20_RS05470 Genome accession   NZ_CP160433
Coordinates   1142227..1144749 (+) Length   840 a.a.
NCBI ID   WP_012435255.1    Uniprot ID   A0AAD2BRF9
Organism   Ralstonia sp. CP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1137227..1149749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP20_RS05450 (ABZP20_05450) - 1138198..1139277 (-) 1080 WP_012435252.1 hypothetical protein -
  ABZP20_RS05455 (ABZP20_05455) - 1139349..1140599 (+) 1251 WP_012435253.1 lipoprotein-releasing ABC transporter permease subunit -
  ABZP20_RS05460 (ABZP20_05460) lolD 1140592..1141320 (+) 729 WP_004626109.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ABZP20_RS05465 (ABZP20_05465) - 1141405..1142217 (+) 813 WP_012435254.1 TatD family hydrolase -
  ABZP20_RS05470 (ABZP20_05470) comA 1142227..1144749 (+) 2523 WP_012435255.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABZP20_RS05475 (ABZP20_05475) - 1144855..1146339 (+) 1485 WP_012435256.1 circularly permuted type 2 ATP-grasp protein -
  ABZP20_RS05480 (ABZP20_05480) - 1146414..1147364 (+) 951 WP_004626118.1 alpha-E domain-containing protein -
  ABZP20_RS05485 (ABZP20_05485) - 1147423..1148268 (+) 846 WP_004626120.1 transglutaminase family protein -
  ABZP20_RS05490 (ABZP20_05490) - 1148351..1149253 (+) 903 WP_012435257.1 hypothetical protein -

Sequence

Protein


Download         Length: 840 a.a.        Molecular weight: 90520.92 Da        Isoelectric Point: 8.7730

>NTDB_id=1021090 ABZP20_RS05470 WP_012435255.1 1142227..1144749(+) (comA) [Ralstonia sp. CP]
MRLGLIGFVAGCVALQMQATLLPVWLPLGVLVLCLSLAGATRRRLMLFPVLLVASTIAAGFGWSDWRAQQRMAVALSPAC
EGKDIIATGVVAELPQTGDDATRFLFHIESSNAGDTVPPRVRLSWYGPRTWGNVGEEDAKPDRRAGIPDLQPGQRWQLTL
RLKRPHSLTNPGGFDGEYAMLADNIRAVGYVRTGKRAQNIALGEASAGFGIGVERWRASVRRHILDALPDGRYAAVIVAL
VVGDQSGIAPDDWDLFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFWLARWLRTPLPLRMPAPRAGAIAAMLAAF
AYCLLVGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCWAAAVVAVVDPWAVMSAGFWLSFGAVAIIFIAAQMALDGHR
SDNPDGWVERTRRALAGGTRIQFAVTFGLLPLTLLLFQQTSVVSAAANGLAIPAVSFMTTPLALIGAALPDPLAQPVLML
AEASFRWLVVWLEWLAKPRWSVWVAPVGPMWAVLLSMVAVALLLVPGGLRAWVWRAQGALLLLPLVLAREPLPSPGEFRL
VAFDIGQGAAALVETANHRLLFDTGPRYGDHADAAARVIAPYLRAHGVEALDTLAVSHEDNDHAGGTETVIGAVPVRTML
ASLPPGHALRGTADANNIGFADCLAGQAWTWDGVVFEVLHPRRLPAESERVSSNARSCVLRIANGRHAALLTGDIEAAQE
SALIDAETPERLMADILLVPHHGSKTSSSGAFLNAVSPQVAVFQVGYRNRYGHPHPQIWQRYVARDIDGLRTDKTGAVVI
QTDGDVLDIQTARKMRPRYWSSAQEVEPLATATGAFDAQP

Nucleotide


Download         Length: 2523 bp        

>NTDB_id=1021090 ABZP20_RS05470 WP_012435255.1 1142227..1144749(+) (comA) [Ralstonia sp. CP]
ATGCGTCTCGGGTTGATCGGCTTTGTTGCCGGCTGCGTGGCATTGCAGATGCAGGCGACGCTGCTGCCGGTGTGGCTGCC
GCTTGGCGTGCTGGTGCTCTGTCTGTCGCTGGCCGGTGCCACGCGGCGTCGGCTGATGCTGTTTCCTGTGTTGCTCGTCG
CCAGCACCATCGCGGCGGGCTTTGGCTGGAGCGATTGGCGTGCGCAGCAGCGCATGGCGGTGGCACTCAGCCCCGCGTGC
GAAGGCAAGGACATCATAGCGACCGGCGTGGTGGCTGAGTTGCCGCAGACCGGTGATGACGCCACGCGCTTTCTCTTTCA
CATCGAATCCAGCAATGCGGGTGATACCGTGCCGCCCCGCGTGCGCCTGTCCTGGTATGGCCCACGCACGTGGGGCAACG
TGGGCGAGGAAGATGCGAAGCCGGACCGACGCGCTGGCATCCCCGATCTGCAGCCCGGCCAACGCTGGCAACTGACGCTG
CGCCTAAAGCGCCCGCACAGCCTGACCAACCCCGGCGGCTTCGATGGCGAATACGCGATGCTGGCCGACAACATCCGGGC
CGTCGGCTATGTGCGTACAGGCAAGCGCGCGCAGAACATCGCGCTTGGCGAGGCGAGCGCCGGTTTCGGAATTGGCGTGG
AGCGCTGGCGTGCCAGCGTGCGGCGCCACATCCTCGATGCCCTGCCCGATGGGCGCTACGCGGCTGTCATTGTCGCCCTG
GTGGTGGGCGACCAGAGCGGCATCGCTCCCGACGACTGGGACCTGTTCCGCCGCACCGGCATCAGCCACCTCGTCAGCAT
TTCGGGGCTGCACATCACGATGATCGCCGGGCTGTTTGCAGCGTTGTGGATGGCGCTGTGGCGTCGCTCGTTCTGGCTGG
CGCGCTGGCTGCGTACGCCGTTGCCGCTGCGCATGCCGGCCCCGCGCGCAGGCGCCATCGCGGCCATGCTGGCTGCGTTC
GCCTACTGCCTGCTCGTCGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCTCCACCGTAGCCATCGCCCGGCT
GACCGATCGGAATGTGCCCGCCAGCCTGTCGCTGTGCTGGGCGGCGGCCGTGGTGGCGGTGGTGGACCCGTGGGCCGTCA
TGTCGGCGGGGTTCTGGCTGTCGTTCGGCGCGGTGGCGATCATCTTCATCGCCGCGCAGATGGCGCTCGATGGCCATCGC
AGTGACAACCCAGATGGCTGGGTCGAACGCACGCGCCGTGCGCTCGCTGGCGGTACGCGGATTCAGTTCGCGGTCACATT
CGGGCTATTGCCTTTGACTTTGCTGCTGTTCCAGCAGACGTCGGTCGTCTCTGCTGCGGCGAATGGGCTGGCGATTCCCG
CGGTGAGTTTCATGACGACACCGCTGGCGCTGATCGGCGCGGCTCTCCCGGACCCGCTAGCGCAGCCAGTGCTGATGTTG
GCCGAAGCGAGCTTCCGGTGGCTGGTCGTATGGCTTGAATGGCTGGCGAAGCCGCGCTGGTCTGTGTGGGTTGCGCCGGT
TGGACCCATGTGGGCAGTGTTGCTGTCGATGGTTGCGGTGGCGCTATTGCTGGTGCCGGGTGGCTTGCGCGCATGGGTGT
GGCGCGCTCAGGGTGCCTTGCTCCTCTTGCCGTTGGTACTGGCGCGCGAGCCATTGCCATCGCCTGGCGAATTCCGGCTC
GTCGCGTTCGACATCGGCCAGGGCGCTGCGGCCTTGGTTGAAACGGCCAACCATCGCCTGCTGTTCGACACCGGCCCGCG
CTACGGCGACCATGCCGATGCCGCCGCCCGCGTCATCGCTCCCTATCTGCGAGCACATGGCGTGGAAGCGCTCGACACGC
TTGCCGTCAGCCACGAAGACAACGACCACGCCGGTGGCACCGAAACGGTGATCGGCGCGGTGCCGGTGCGCACCATGTTG
GCGTCTTTGCCTCCGGGGCACGCCCTGCGCGGCACGGCCGATGCCAACAACATCGGTTTTGCCGATTGTTTGGCTGGGCA
AGCATGGACGTGGGACGGCGTTGTCTTTGAGGTGCTGCACCCGCGGCGTTTGCCGGCTGAAAGCGAGCGCGTGTCCAGCA
ACGCCCGCAGTTGTGTGCTGCGTATCGCCAATGGCCGCCACGCCGCCTTGCTGACCGGCGATATCGAAGCCGCCCAGGAA
AGCGCGCTGATCGACGCAGAAACGCCTGAGCGACTGATGGCAGACATCTTGCTTGTGCCTCATCACGGCAGCAAGACAAG
CTCCAGCGGCGCGTTCCTGAACGCGGTTTCTCCGCAAGTGGCGGTTTTCCAGGTCGGCTACCGCAATCGGTACGGACATC
CGCATCCGCAGATTTGGCAGCGCTACGTAGCGCGCGACATCGACGGGTTGCGCACGGACAAGACCGGTGCCGTCGTCATT
CAGACCGACGGCGATGTGCTGGACATCCAGACCGCGCGCAAAATGCGGCCGCGGTACTGGTCTTCCGCACAGGAAGTGGA
ACCCCTGGCAACGGCCACCGGCGCCTTCGACGCCCAGCCGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-194)

Competence protein (Competence)

(240-525)

Metallo-beta-lactamase superfamily (Lactamase_B)

(566-762)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

72.845

100

0.735

Multiple sequence alignment