Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ABZ559_RS05735 Genome accession   NZ_CP160400
Coordinates   1115426..1116115 (-) Length   229 a.a.
NCBI ID   WP_367007504.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110426..1121115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS05710 (ABZ559_05710) - 1110515..1110994 (+) 480 WP_367007501.1 ferrous iron transport protein A -
  ABZ559_RS05715 (ABZ559_05715) feoB 1110987..1113125 (+) 2139 WP_367007502.1 ferrous iron transport protein B -
  ABZ559_RS05720 (ABZ559_05720) - 1113136..1113276 (+) 141 WP_018376527.1 FeoB-associated Cys-rich membrane protein -
  ABZ559_RS05725 (ABZ559_05725) tnpA 1113453..1113926 (+) 474 WP_002891962.1 IS200/IS605 family transposase -
  ABZ559_RS05730 (ABZ559_05730) - 1114118..1115425 (-) 1308 WP_367007503.1 HAMP domain-containing sensor histidine kinase -
  ABZ559_RS05735 (ABZ559_05735) scnR 1115426..1116115 (-) 690 WP_367007504.1 response regulator transcription factor Regulator
  ABZ559_RS05740 (ABZ559_05740) - 1116262..1117173 (+) 912 WP_367007505.1 ABC transporter ATP-binding protein -
  ABZ559_RS05745 (ABZ559_05745) - 1117183..1117935 (+) 753 WP_367007506.1 ABC transporter permease -
  ABZ559_RS05750 (ABZ559_05750) - 1117937..1118674 (+) 738 WP_367007507.1 ABC transporter permease -
  ABZ559_RS05755 (ABZ559_05755) - 1118761..1119624 (+) 864 WP_367007508.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  ABZ559_RS05760 (ABZ559_05760) - 1119614..1120450 (+) 837 WP_018376520.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26414.55 Da        Isoelectric Point: 5.4316

>NTDB_id=1020932 ABZ559_RS05735 WP_367007504.1 1115426..1116115(-) (scnR) [Streptococcus sp. ZY19097]
MKEKERKLLILDDNPEILDMITESLSITGFSHLTRAASKKEALELLEREAFDLAILDIMLPDGSGFEVLRHIRQKSDMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRLLSILKRSYPPQDDVVQLDSCQIDFERAAILKEDQEIPLTAKEY
SLLKVLYDHKNKIVTFDQLLSKVWGDNYQGYENTLMAHIRKVRQKIEANPSKPVHLITIKGLGYQLRVD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1020932 ABZ559_RS05735 WP_367007504.1 1115426..1116115(-) (scnR) [Streptococcus sp. ZY19097]
ATGAAAGAAAAAGAGAGAAAACTACTCATCTTAGATGACAATCCTGAGATTTTAGACATGATCACAGAAAGTCTATCTAT
TACTGGTTTCAGTCATTTGACACGGGCTGCCAGCAAAAAAGAAGCCCTAGAACTTCTGGAAAGGGAAGCCTTTGACTTGG
CGATTTTGGACATCATGCTACCAGATGGTTCTGGTTTTGAGGTGCTTCGCCACATTCGCCAGAAATCTGACATGCCTGTG
CTCTTTCTGTCTGCGGTGTCTGACATTGAAAAGCAATACCAAGGTTTCGAGCTGGGAGCGGATGACTACATCGTCAAACC
CTTTCGTCCTAAGGAACTAGAACTGCGGCTCTTGTCCATTCTCAAGCGCAGCTATCCGCCGCAAGATGACGTGGTGCAAT
TAGATAGTTGTCAGATTGATTTTGAGCGCGCAGCCATTCTAAAAGAGGACCAAGAAATTCCGCTAACCGCTAAAGAATAC
AGCCTGCTCAAGGTGCTATACGATCATAAAAATAAAATCGTCACCTTCGACCAGCTCTTGAGTAAGGTTTGGGGCGACAA
TTATCAAGGTTATGAAAATACGCTCATGGCTCATATCCGCAAGGTGCGGCAGAAGATAGAGGCTAATCCGTCTAAACCTG
TCCACCTCATTACTATTAAGGGGCTGGGCTACCAGCTGCGGGTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-116)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

74.123

99.563

0.738
  micA Streptococcus pneumoniae Cp1015

38.095

100

0.384

Multiple sequence alignment