Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   ABZ559_RS00010 Genome accession   NZ_CP160400
Coordinates   1565..2335 (-) Length   256 a.a.
NCBI ID   WP_367006702.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1..7335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS00005 (ABZ559_00005) dnaA 1..1362 (-) 1362 WP_367006700.1 chromosomal replication initiator protein DnaA -
  ABZ559_RS00010 (ABZ559_00010) spo0J 1565..2335 (-) 771 WP_367006702.1 ParB/RepB/Spo0J family partition protein Regulator
  ABZ559_RS00015 (ABZ559_00015) htrA 2395..3606 (-) 1212 WP_367006704.1 trypsin-like peptidase domain-containing protein Regulator
  ABZ559_RS00020 (ABZ559_00020) rlmH 3818..4297 (+) 480 WP_273413279.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABZ559_RS00030 (ABZ559_00030) - 4898..5170 (-) 273 WP_018375142.1 Veg family protein -
  ABZ559_RS00035 (ABZ559_00035) dnaB 5208..6572 (-) 1365 WP_273413274.1 replicative DNA helicase -
  ABZ559_RS00040 (ABZ559_00040) rplI 6607..7059 (-) 453 WP_367006706.1 50S ribosomal protein L9 -

Sequence


Protein


Download         Length: 256 a.a.        Molecular weight: 29472.90 Da        Isoelectric Point: 8.7082

>NTDB_id=1020900 ABZ559_RS00010 WP_367006702.1 1565..2335(-) (spo0J) [Streptococcus sp. ZY19097]
MSEKLELIPIRDISPNPYQPRLEFNQKDLEELANSIKKNGLIQPIIVRPSSIFGYELIAGERRLRASELAGLDKIPSIVK
ELSNQESMQQAVVENLQRSNLNPIEEAKAYQQLLDKNQMTHEELAQYMGKSRPYITNCLRLLNLPSFLIQALETDNLSQG
HARLLLTLDSSDKQEYWYQRILKESLSVRQLEKLLKETPKVKTNKTVNLFIKDKEKELSKLLGLPVTISQKKGGQGQLTF
HFSNEEDFNRIINKLD

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1020900 ABZ559_RS00010 WP_367006702.1 1565..2335(-) (spo0J) [Streptococcus sp. ZY19097]
ATGTCTGAAAAATTAGAATTGATACCCATTAGGGATATTTCTCCAAATCCTTATCAACCACGGTTGGAATTTAATCAAAA
AGATCTTGAGGAGTTAGCAAATTCAATTAAGAAAAATGGTTTGATCCAGCCAATTATCGTTAGGCCTTCCAGTATTTTCG
GGTATGAACTTATTGCAGGAGAACGACGTTTACGGGCGAGCGAATTAGCTGGACTTGATAAAATTCCTTCTATTGTTAAG
GAATTAAGCAATCAAGAAAGTATGCAACAGGCCGTTGTTGAAAATTTACAACGTTCCAATCTTAATCCTATTGAAGAAGC
AAAAGCCTACCAGCAACTCCTTGATAAAAATCAGATGACTCACGAAGAACTTGCCCAATATATGGGAAAATCACGCCCTT
ATATCACTAACTGTTTGCGATTACTTAACCTTCCTTCATTTTTAATTCAAGCCTTGGAAACTGATAACCTTTCTCAAGGG
CATGCGCGACTACTCCTCACTTTAGACAGTTCTGATAAACAAGAATACTGGTATCAGCGCATTCTCAAAGAGTCTCTGAG
TGTGAGACAACTTGAAAAATTACTAAAAGAAACTCCTAAGGTTAAAACTAACAAAACAGTCAATCTTTTCATAAAAGATA
AAGAAAAAGAGTTGTCAAAATTATTAGGACTACCTGTTACTATTAGTCAGAAAAAAGGTGGACAGGGACAACTCACTTTT
CATTTTTCAAACGAGGAAGATTTTAACAGAATTATCAACAAGTTAGATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

60.547

100

0.605


Multiple sequence alignment