Detailed information NTG1020652

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: AB1F71_RS01325
• Genome accession: NZ_CP160386
• Coordinates: 247350..248402 (+)
• Length: 350 a.a.
• NCBI ID: WP_002262737.1
• Uniprot ID: Q8DW22
• Organism: Streptococcus mutans strain UA159 ykuR deletion
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 242350..253402

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1F71_RS01310 (AB1F71_01310)	-	243629..245278 (+)	1650	WP_002262740.1	peptide ABC transporter substrate-binding protein	-
AB1F71_RS01315 (AB1F71_01315)	-	245384..246298 (+)	915	WP_002262739.1	ABC transporter permease	-
AB1F71_RS01320 (AB1F71_01320)	-	246309..247340 (+)	1032	WP_002262738.1	ABC transporter permease	-
AB1F71_RS01325 (AB1F71_01325)	oppD	247350..248402 (+)	1053	WP_002262737.1	ABC transporter ATP-binding protein	Regulator
AB1F71_RS01330 (AB1F71_01330)	amiF	248395..249321 (+)	927	WP_002262736.1	ATP-binding cassette domain-containing protein	Regulator
AB1F71_RS01335 (AB1F71_01335)	-	249977..250579 (+)	603	WP_002262735.1	nitroreductase family protein	-
AB1F71_RS01340 (AB1F71_01340)	-	250796..251752 (-)	957	WP_002262734.1	LuxR C-terminal-related transcriptional regulator	-
AB1F71_RS01345 (AB1F71_01345)	ptcA	251991..253010 (+)	1020	WP_002282737.1	putrescine carbamoyltransferase	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 39171.64 Da
• Isoelectric Point: 5.5583

>NTDB_id=1020652 AB1F71_RS01325 WP_002262737.1 247350..248402(+) (oppD) [Streptococcus mutans strain UA159 ykuR deletion]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGHNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILVADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide

• Length: 1053 bp

>NTDB_id=1020652 AB1F71_RS01325 WP_002262737.1 247350..248402(+) (oppD) [Streptococcus mutans strain UA159 ykuR deletion]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTAACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACACAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTTAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCACCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTGTTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (27-183)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-297)

3D structure

• AlphaFold DB: Q8DW22

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	100	100	1
amiE	Streptococcus salivarius strain HSISS4	54.728	99.714	0.546
amiE	Streptococcus thermophilus LMG 18311	54.441	99.714	0.543
amiE	Streptococcus thermophilus LMD-9	54.441	99.714	0.543