Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   AB1F71_RS01330 Genome accession   NZ_CP160386
Coordinates   248395..249321 (+) Length   308 a.a.
NCBI ID   WP_002262736.1    Uniprot ID   P72479
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 243395..254321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS01310 (AB1F71_01310) - 243629..245278 (+) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -
  AB1F71_RS01315 (AB1F71_01315) - 245384..246298 (+) 915 WP_002262739.1 ABC transporter permease -
  AB1F71_RS01320 (AB1F71_01320) - 246309..247340 (+) 1032 WP_002262738.1 ABC transporter permease -
  AB1F71_RS01325 (AB1F71_01325) oppD 247350..248402 (+) 1053 WP_002262737.1 ABC transporter ATP-binding protein Regulator
  AB1F71_RS01330 (AB1F71_01330) amiF 248395..249321 (+) 927 WP_002262736.1 ATP-binding cassette domain-containing protein Regulator
  AB1F71_RS01335 (AB1F71_01335) - 249977..250579 (+) 603 WP_002262735.1 nitroreductase family protein -
  AB1F71_RS01340 (AB1F71_01340) - 250796..251752 (-) 957 WP_002262734.1 LuxR C-terminal-related transcriptional regulator -
  AB1F71_RS01345 (AB1F71_01345) ptcA 251991..253010 (+) 1020 WP_002282737.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34841.99 Da        Isoelectric Point: 7.6953

>NTDB_id=1020653 AB1F71_RS01330 WP_002262736.1 248395..249321(+) (amiF) [Streptococcus mutans strain UA159 ykuR deletion]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFNIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1020653 AB1F71_RS01330 WP_002262736.1 248395..249321(+) (amiF) [Streptococcus mutans strain UA159 ykuR deletion]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTAATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTTGAAGGCGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGGGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P72479

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552

Multiple sequence alignment