Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QRP18_RS12640 Genome accession   NZ_CP160382
Coordinates   2747704..2748318 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain ST110-8     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2742704..2753318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRP18_RS12620 (QRP18_12620) - 2742988..2743905 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  QRP18_RS12625 (QRP18_12625) - 2744158..2745828 (-) 1671 WP_110177561.1 SulP family inorganic anion transporter -
  QRP18_RS12630 (QRP18_12630) can 2746112..2746780 (+) 669 WP_005462578.1 carbonate dehydratase -
  QRP18_RS12635 (QRP18_12635) hpt 2746855..2747385 (-) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  QRP18_RS12640 (QRP18_12640) opaR 2747704..2748318 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  QRP18_RS12645 (QRP18_12645) lpdA 2748446..2749873 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  QRP18_RS12650 (QRP18_12650) aceF 2750142..2752031 (-) 1890 WP_110177560.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=1020547 QRP18_RS12640 WP_005479697.1 2747704..2748318(+) (opaR) [Vibrio parahaemolyticus strain ST110-8]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1020547 QRP18_RS12640 WP_005479697.1 2747704..2748318(+) (opaR) [Vibrio parahaemolyticus strain ST110-8]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAACCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment