Detailed information NTG1020533

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: QRP18_RS01330
• Genome accession: NZ_CP160382
• Coordinates: 281620..282627 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain ST110-8
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 276620..287627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRP18_RS01295 (QRP18_01295)	-	276797..277228 (-)	432	WP_089183680.1	DUF2787 family protein	-
QRP18_RS01300 (QRP18_01300)	radC	277225..277698 (-)	474	WP_005489555.1	DNA repair protein RadC	-
QRP18_RS01305 (QRP18_01305)	-	277869..278018 (+)	150	WP_005489496.1	AlpA family phage regulatory protein	-
QRP18_RS01310 (QRP18_01310)	-	278178..278402 (+)	225	WP_020904301.1	hypothetical protein	-
QRP18_RS01315 (QRP18_01315)	hslU	278828..280159 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
QRP18_RS01320 (QRP18_01320)	hslV	280183..280734 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
QRP18_RS01325 (QRP18_01325)	ftsN	280898..281443 (-)	546	WP_005489623.1	cell division protein FtsN	-
QRP18_RS01330 (QRP18_01330)	cytR	281620..282627 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
QRP18_RS01335 (QRP18_01335)	priA	282960..285164 (-)	2205	WP_029805229.1	primosomal protein N'	-
QRP18_RS01340 (QRP18_01340)	rpmE	285459..285680 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
QRP18_RS01345 (QRP18_01345)	rpsJ	286138..286449 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
QRP18_RS01350 (QRP18_01350)	rplC	286464..287093 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=1020533 QRP18_RS01330 WP_005481416.1 281620..282627(-) (cytR) [Vibrio parahaemolyticus strain ST110-8]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=1020533 QRP18_RS01330 WP_005481416.1 281620..282627(-) (cytR) [Vibrio parahaemolyticus strain ST110-8]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGACCAGATAC
AGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCT
GTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904