Detailed information NTG1020517

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAFM42_RS14795
• Genome accession: NZ_CP160329
• Coordinates: 2941484..2942350 (-)
• Length: 288 a.a.
• NCBI ID: WP_053254339.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain PFX1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2936484..2947350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFM42_RS14755 (AAFM42_14710)	-	2937089..2938387 (-)	1299	WP_053254333.1	NAD(P)/FAD-dependent oxidoreductase	-
AAFM42_RS14760 (AAFM42_14715)	-	2938425..2938598 (-)	174	WP_016976295.1	DUF3094 family protein	-
AAFM42_RS14765 (AAFM42_14720)	-	2938622..2939251 (-)	630	WP_053254334.1	DUF1780 domain-containing protein	-
AAFM42_RS14770 (AAFM42_14725)	-	2939297..2939764 (+)	468	WP_053254335.1	hypothetical protein	-
AAFM42_RS14775 (AAFM42_14730)	-	2939761..2940450 (+)	690	WP_053254336.1	energy-coupling factor ABC transporter permease	-
AAFM42_RS14780 (AAFM42_14735)	-	2940455..2940670 (+)	216	WP_003171680.1	hypothetical protein	-
AAFM42_RS14785 (AAFM42_14740)	yacG	2940667..2940867 (-)	201	WP_053254337.1	DNA gyrase inhibitor YacG	-
AAFM42_RS14790 (AAFM42_14745)	coaE	2940864..2941487 (-)	624	WP_053254338.1	dephospho-CoA kinase	-
AAFM42_RS14795 (AAFM42_14750)	pilD	2941484..2942350 (-)	867	WP_053254339.1	A24 family peptidase	Machinery gene
AAFM42_RS14800 (AAFM42_14755)	pilC	2942347..2943555 (-)	1209	WP_053254340.1	type II secretion system F family protein	Machinery gene
AAFM42_RS14805 (AAFM42_14760)	-	2943589..2944002 (+)	414	WP_053254341.1	pilin	-
AAFM42_RS14815 (AAFM42_14770)	-	2944096..2944401 (+)	306	WP_053254342.1	DUF6388 family protein	-
AAFM42_RS14820 (AAFM42_14775)	nadC	2944423..2945271 (-)	849	WP_053254343.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31894.09 Da
• Isoelectric Point: 8.5921

>NTDB_id=1020517 AAFM42_RS14795 WP_053254339.1 2941484..2942350(-) (pilD) [Pseudomonas fluorescens strain PFX1]
MSLLPSAQPWGFVGMAFVLGLIVGSFINVLVWRLPKRLEREWRAQAQEVLGLPADPASPTYNLMRRNACCMYCAQPTRPW
ENIPLLSYLILRGRCAHCHEPIGRRYPATELACALGSAIVAWHFGFGWQAGAVMVLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSFDVLTTLPNALWGAVIGYMSLWTVFWLFKLITGKDGMGYGDFKLLALLGAWGGWQILPMTLLIASLLGVL
AGLILMRLRRSQASIPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1020517 AAFM42_RS14795 WP_053254339.1 2941484..2942350(-) (pilD) [Pseudomonas fluorescens strain PFX1]
TTGAGCCTGCTGCCCAGCGCACAGCCATGGGGTTTTGTCGGGATGGCGTTCGTTCTGGGGCTGATCGTCGGCAGCTTCAT
CAACGTGCTGGTGTGGCGCCTGCCAAAGAGGCTCGAGCGCGAATGGCGTGCCCAAGCCCAGGAAGTGCTGGGCTTGCCTG
CCGACCCCGCCAGCCCCACGTACAACCTGATGCGCCGCAACGCCTGCTGCATGTATTGCGCGCAGCCGACTCGCCCCTGG
GAAAATATCCCGCTGCTCAGTTACCTGATACTCAGAGGCCGTTGCGCCCATTGCCATGAACCTATCGGTCGCCGCTACCC
CGCCACCGAACTGGCTTGCGCGCTGGGCTCGGCCATTGTTGCCTGGCATTTCGGTTTCGGCTGGCAAGCGGGCGCGGTGA
TGGTGTTGAGCTGGGGGTTGCTGGCCATGAGCCTGATCGACGTGGATCATCAATTATTGCCGGACGTTCTGGTGCTGCCG
CTGCTATGGCTCGGGCTGATCCTCAATAGCTTCGACGTGTTGACGACACTGCCCAATGCGCTTTGGGGCGCAGTCATAGG
CTATATGAGCCTGTGGACCGTGTTCTGGTTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TATTGGCCCTGCTCGGTGCTTGGGGTGGCTGGCAGATTCTGCCGATGACGCTACTGATCGCCTCGCTGCTGGGCGTGCTC
GCCGGCCTGATCCTGATGCGCTTGCGCAGGTCCCAGGCTTCGATTCCGATGCCGTTTGGTCCCTGTCTGGCAATTGCCGG
CTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.36	96.528	0.486
pilD	Vibrio campbellii strain DS40M4	47.67	96.875	0.462
pilD	Acinetobacter nosocomialis M2	47.619	94.792	0.451
pilD	Acinetobacter baumannii D1279779	47.619	94.792	0.451
pilD	Neisseria gonorrhoeae MS11	45.926	93.75	0.431