Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABU188_RS08350 Genome accession   NZ_CP160327
Coordinates   1827842..1828648 (+) Length   268 a.a.
NCBI ID   WP_100152195.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1822842..1833648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU188_RS08330 (ABU188_08055) - 1824298..1824750 (+) 453 WP_367440105.1 hypothetical protein -
  ABU188_RS08335 (ABU188_08060) - 1824989..1825825 (+) 837 WP_370470316.1 hypothetical protein -
  ABU188_RS08340 (ABU188_08065) pgeF 1825912..1826706 (-) 795 WP_370470317.1 peptidoglycan editing factor PgeF -
  ABU188_RS08345 (ABU188_08070) rluD 1826719..1827843 (-) 1125 WP_367420119.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABU188_RS08350 (ABU188_08075) comL 1827842..1828648 (+) 807 WP_100152195.1 outer membrane protein assembly factor BamD Machinery gene
  ABU188_RS08355 (ABU188_15610) - 1828809..1829027 (-) 219 WP_370470318.1 LysR family transcriptional regulator -
  ABU188_RS08360 (ABU188_08085) - 1829109..1829846 (-) 738 WP_370470319.1 MBL fold metallo-hydrolase -
  ABU188_RS08365 (ABU188_08090) speD 1830073..1830438 (-) 366 WP_367440093.1 adenosylmethionine decarboxylase -
  ABU188_RS08370 (ABU188_15615) - 1830438..1832300 (-) 1863 WP_370470320.1 DUF4178 domain-containing protein -
  ABU188_RS08375 (ABU188_08115) - 1832309..1833340 (-) 1032 WP_100139678.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31068.89 Da        Isoelectric Point: 6.0347

>NTDB_id=1020475 ABU188_RS08350 WP_100152195.1 1827842..1828648(+) (comL) [Snodgrassella alvi strain Acer10]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQSRFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVNKLAKQDWSDRDPKANREAYTTFAQLVEYFPQS
KYAADARDKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQYQNTPNVEEALAIMVSAYEKLGEQKLSDDTKRV
LAQNFPNSPYLQSPWQDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1020475 ABU188_RS08350 WP_100152195.1 1827842..1828648(+) (comL) [Snodgrassella alvi strain Acer10]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTTTTACTGAGTGCCTGTGCCAGCACAAGTACGGTCGATAAGGATTC
CCAGATTACTCAGGACTGGTCTGTTCAGCGTCTGTATAATGAAGCACACGATGAGCTGATGCATCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGTCTCGTTTCCCGTATGGTTCGTATGCGGAGCAGGCTCAGCTTGACACAGCATAT
GCTTATTATAAAGATGATGAGAATGATAAAGCGCTGGCGGCAATTGAACAGTTTCAGCGTTTGTATCCGCAACACCCCAA
TATGGATTACGCTTTGTATTTGAAAGCACTGATTCAGCTGAATGAGGATAAATCCTTTGTTAATAAGCTGGCCAAACAAG
ATTGGTCTGACCGCGACCCGAAAGCTAATCGGGAAGCTTATACCACTTTTGCACAACTAGTAGAATATTTCCCTCAAAGT
AAATATGCTGCCGATGCTCGCGATAAGATGCAGAAACTACTGGATGCGCTTGGCGGGAATGAGCTTTCAGTAGCACGTTA
TTATATGAAACGCGGTGCATGGCTGGCGGCTGTTGGCCGTGCACAGACGGTTATTTCTCAATACCAGAATACGCCTAATG
TGGAGGAAGCGCTGGCTATTATGGTTTCTGCGTATGAAAAACTGGGTGAGCAGAAGCTCAGTGATGATACCAAGCGCGTT
CTGGCACAGAATTTTCCAAATAGCCCGTATCTGCAATCTCCGTGGCAGGATCACAATGCCATTCCATGGTGGCGTTATTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

68.165

99.627

0.679
  comL Neisseria gonorrhoeae MS11

67.79

99.627

0.675

Multiple sequence alignment