Detailed information NTG1020461

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABU188_RS02520
• Genome accession: NZ_CP160327
• Coordinates: 565815..567287 (+)
• Length: 490 a.a.
• NCBI ID: WP_370469957.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 560815..572287

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU188_RS02510 (ABU188_00145)	parC	561923..564241 (+)	2319	WP_370469955.1	DNA topoisomerase IV subunit A	-
ABU188_RS02515 (ABU188_14565)	-	564248..565822 (+)	1575	WP_370469956.1	ATP-binding protein	-
ABU188_RS02520 (ABU188_00160)	pilR	565815..567287 (+)	1473	WP_370469957.1	sigma-54-dependent transcriptional regulator	Regulator
ABU188_RS02525 (ABU188_00165)	-	567326..568048 (+)	723	WP_370469958.1	class I SAM-dependent methyltransferase	-
ABU188_RS02530 (ABU188_00175)	-	568121..568903 (+)	783	WP_370469959.1	hypothetical protein	-
ABU188_RS02535 (ABU188_00180)	amgK	569162..570166 (-)	1005	WP_370469960.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 54660.23 Da
• Isoelectric Point: 5.9984

>NTDB_id=1020461 ABU188_RS02520 WP_370469957.1 565815..567287(+) (pilR) [Snodgrassella alvi strain Acer10]
MNSQVELKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHAFSLVLTDMRMPDGSGLEIVDYITEHNLD
IPIAVITAYGNAVQAVQALKNGAFDYLQKPITLAQLRTLVKSVLTINHSSDTDTITKAATSTKQTEVKSQNVSEHGTRTQ
SAAQERLLGHSPLIAEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSARKDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADSDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRLICATHKDLNALVESGQF
RQDLFYRLNVVSITMPPLRELRDDLPELIQVLLQRILRDETMTLSPAAEQALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIQSLSFDNQRNLSVDSVRNSAEENPARTDFQFGHTQIQDYLDDVERHILQQALAQTRYNRTQAAKLLGISFRSM
RYRMERLGIA

Nucleotide

• Length: 1473 bp

>NTDB_id=1020461 ABU188_RS02520 WP_370469957.1 565815..567287(+) (pilR) [Snodgrassella alvi strain Acer10]
ATGAATAGTCAGGTAGAATTAAAAAAGCCAGTGCTGGTAATAGATGATGAAGCTGATATTCGTGATTTAATGGAATTAAC
CCTGATAAAAATGGGTTTATCTGTCCAGACCGCTGCCGGAGTGGCTGAAGCCAAAAAAGCATTACGTAATCATGCTTTCT
CTCTGGTACTTACTGATATGCGCATGCCAGATGGATCTGGTCTGGAAATTGTAGATTATATAACCGAACACAATCTGGAT
ATTCCGATTGCTGTGATTACTGCTTACGGTAACGCAGTGCAAGCAGTGCAGGCACTAAAAAATGGTGCTTTTGATTATCT
GCAAAAACCCATTACTCTGGCACAACTGCGCACATTAGTTAAATCTGTGCTGACAATCAACCATAGCTCTGATACCGACA
CCATCACTAAAGCAGCTACAAGCACTAAACAAACTGAAGTGAAATCCCAGAATGTTTCTGAGCACGGTACAAGGACCCAA
AGTGCTGCTCAAGAGCGACTGCTTGGTCACTCCCCTTTAATTGCTGAAGTGCGACAATTAATAAGCAAACTGGCTAAATC
CAATGTACCCGTCTATATTGCCGGAGAATCCGGTAGTGGAAAAGAGCAAGCAGCACGCAGTATACATGAACAATCAGCAC
GTAAAGATAAAGCATTTGTTGCAGTCAATTGCGGGGCGATTCCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGGAGTTTTACCGGCGCAGACAGTGACAGAGCAGGATTTTTTCAGCATGCAGACGGTGGAACATTATTTTTGGATGA
AGTGGCTGATTTGCCATTATCCATGCAGGTAAAGCTTTTGCGTGCCATTCAGGAACGAGCTGTTCGCCGGATTGGTGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTCTTATCTGTGCTACTCATAAAGACCTGAATGCTTTGGTAGAATCGGGACAATTT
CGGCAGGATTTGTTTTACCGTCTAAATGTGGTTTCTATAACTATGCCCCCCTTACGTGAATTACGTGATGATTTACCAGA
ACTGATTCAGGTTTTGTTGCAACGTATTCTACGTGATGAAACCATGACTCTGAGCCCAGCTGCTGAGCAAGCTTTATTGC
AATATAGCTATCCCGGCAATTTCCGCGAGCTGGAAAATATATTAGAACGAGCAATCGCTTTATCAAAAAATCATATTATC
GAAGTTGATGATTTACAGATTCAAAGTCTCTCATTTGATAATCAGCGTAATTTATCAGTAGATAGTGTCCGTAATTCTGC
CGAGGAAAATCCCGCAAGAACAGATTTTCAGTTTGGTCACACCCAGATTCAAGACTATCTCGACGATGTAGAACGTCATA
TTCTGCAGCAGGCGCTGGCACAGACTCGTTATAACCGTACACAAGCGGCAAAACTACTGGGAATCAGCTTTAGATCAATG
CGTTATCGGATGGAACGATTGGGTATTGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (447-486)

• Response regulator receiver domain (Response_reg) (11-120)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	48.56	99.184	0.482
pilR	Acinetobacter baumannii strain A118	41.942	98.776	0.414