Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABUW22_RS04610 Genome accession   NZ_CP160326
Coordinates   1048006..1048812 (-) Length   268 a.a.
NCBI ID   WP_100152195.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1043006..1053812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUW22_RS04590 (ABUW22_09815) - 1043923..1044321 (+) 399 WP_100139677.1 DUF350 domain-containing protein -
  ABUW22_RS04595 (ABUW22_09820) - 1044349..1045380 (+) 1032 WP_267408299.1 SPFH domain-containing protein -
  ABUW22_RS04600 (ABUW22_09825) - 1045389..1047251 (+) 1863 WP_367417937.1 DUF4178 domain-containing protein -
  ABUW22_RS04605 (ABUW22_09830) speD 1047251..1047616 (+) 366 WP_367417938.1 adenosylmethionine decarboxylase -
  ABUW22_RS04610 (ABUW22_09835) comL 1048006..1048812 (-) 807 WP_100152195.1 outer membrane protein assembly factor BamD Machinery gene
  ABUW22_RS04615 (ABUW22_09840) rluD 1048811..1049935 (+) 1125 WP_370387775.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABUW22_RS04620 (ABUW22_09845) pgeF 1049948..1050742 (+) 795 WP_370387776.1 peptidoglycan editing factor PgeF -
  ABUW22_RS04625 (ABUW22_14985) - 1050827..1050976 (-) 150 WP_267391427.1 hypothetical protein -
  ABUW22_RS04630 (ABUW22_09850) - 1051267..1051551 (-) 285 WP_267391426.1 hypothetical protein -
  ABUW22_RS04635 (ABUW22_09855) - 1051898..1052350 (-) 453 WP_267391425.1 hypothetical protein -
  ABUW22_RS04640 (ABUW22_09860) - 1052945..1053673 (+) 729 WP_367417940.1 beta-ketoacyl synthase chain length factor -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31068.89 Da        Isoelectric Point: 6.0347

>NTDB_id=1020441 ABUW22_RS04610 WP_100152195.1 1048006..1048812(-) (comL) [Snodgrassella alvi strain Acer01]
MKNLFLAVALGLLLSACASTSTVDKDSQITQDWSVQRLYNEAHDELMHRNYTHAEKLYEILQSRFPYGSYAEQAQLDTAY
AYYKDDENDKALAAIEQFQRLYPQHPNMDYALYLKALIQLNEDKSFVNKLAKQDWSDRDPKANREAYTTFAQLVEYFPQS
KYAADARDKMQKLLDALGGNELSVARYYMKRGAWLAAVGRAQTVISQYQNTPNVEEALAIMVSAYEKLGEQKLSDDTKRV
LAQNFPNSPYLQSPWQDHNAIPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1020441 ABUW22_RS04610 WP_100152195.1 1048006..1048812(-) (comL) [Snodgrassella alvi strain Acer01]
ATGAAAAATTTGTTTTTGGCGGTGGCCTTAGGCCTTTTACTGAGTGCCTGTGCCAGCACAAGTACGGTCGATAAGGATTC
CCAGATTACTCAGGACTGGTCTGTTCAGCGTCTGTATAATGAAGCACACGATGAGCTGATGCATCGTAATTATACTCATG
CAGAGAAATTATACGAAATTCTGCAGTCTCGTTTCCCGTATGGTTCGTATGCGGAGCAGGCTCAGCTTGACACAGCATAT
GCTTATTATAAAGATGATGAGAATGATAAAGCATTGGCGGCAATTGAACAGTTTCAGCGTTTGTATCCGCAACACCCCAA
TATGGATTACGCTTTGTATTTGAAAGCACTGATTCAGCTGAATGAGGATAAATCCTTTGTTAATAAGCTGGCCAAACAAG
ATTGGTCTGACCGCGACCCGAAAGCTAACCGGGAAGCTTATACCACTTTTGCACAACTAGTAGAATATTTCCCTCAAAGT
AAATATGCTGCCGATGCTCGCGATAAAATGCAGAAACTACTGGATGCGCTTGGCGGGAATGAGCTTTCAGTAGCACGTTA
TTATATGAAACGCGGTGCATGGCTGGCAGCTGTTGGCCGTGCACAGACGGTTATTTCTCAATACCAGAATACGCCTAATG
TGGAGGAAGCGCTGGCTATTATGGTTTCTGCGTATGAAAAACTGGGTGAGCAGAAGCTCAGTGATGATACCAAGCGTGTT
CTGGCACAGAATTTTCCAAATAGCCCGTATCTGCAATCTCCGTGGCAGGATCACAATGCCATTCCATGGTGGCGTTACTG
GAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

68.165

99.627

0.679
  comL Neisseria gonorrhoeae MS11

67.79

99.627

0.675

Multiple sequence alignment