Detailed information NTG1020429

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABUW22_RS00025
• Genome accession: NZ_CP160326
• Coordinates: 2900..4372 (-)
• Length: 490 a.a.
• NCBI ID: WP_370387488.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer01
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1..9372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABUW22_RS00005 (ABUW22_03800)	amgK	25..1029 (+)	1005	WP_367418859.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABUW22_RS00010 (ABUW22_03805)	-	1356..1613 (-)	258	WP_367418860.1	hypothetical protein	-
ABUW22_RS00015 (ABUW22_03810)	-	1592..2065 (-)	474	WP_367418861.1	hypothetical protein	-
ABUW22_RS00020 (ABUW22_03815)	-	2139..2888 (-)	750	WP_367418862.1	class I SAM-dependent methyltransferase	-
ABUW22_RS00025 (ABUW22_03820)	pilR	2900..4372 (-)	1473	WP_370387488.1	sigma-54-dependent transcriptional regulator	Regulator
ABUW22_RS00030 (ABUW22_03825)	-	4365..5939 (-)	1575	WP_367418863.1	ATP-binding protein	-
ABUW22_RS00035 (ABUW22_03830)	parC	5946..8264 (-)	2319	WP_370387489.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 490 a.a.
• Molecular weight: 54683.23 Da
• Isoelectric Point: 6.2030

>NTDB_id=1020429 ABUW22_RS00025 WP_370387488.1 2900..4372(-) (pilR) [Snodgrassella alvi strain Acer01]
MNSQVELKKPVLVIDDEADIRDLMELTLIKMGLSVQTAAGVAEAKKALRNHAFSLVLTDMRMPDGSGLEIVDYITEHNLD
IPIAVITAYGNAVQAVQALKNGAFDYLQKPITLAQLRTLVKSVLTINHSSDTDSITKAATNTKQSEVKSQNVSESSTRNQ
SAAQERLLGHSPLIAEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSVRKDKAFVAVNCGAIPEALMESEFFGYK
KGSFTGADNDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVETGQF
RQDLFYRLNVVSITMPPLRELRDDLPELIQVLLRRILRDETMTLSPAAEQALLQYSYPGNFRELENILERAIALSKNHII
EVDDLQIQSFSFDNQRNLSADSVRNSAGENPARTDFQFGHTQIQDYLDDVERHILQQALAQTRYNRTQAAKLLGISFRSM
RYRMERLGIA

Nucleotide

• Length: 1473 bp

>NTDB_id=1020429 ABUW22_RS00025 WP_370387488.1 2900..4372(-) (pilR) [Snodgrassella alvi strain Acer01]
ATGAATAGTCAGGTAGAATTAAAAAAGCCAGTGCTGGTAATAGATGATGAAGCTGATATTCGTGATTTAATGGAATTAAC
CCTGATAAAAATGGGTTTATCTGTCCAGACCGCTGCCGGAGTGGCTGAAGCCAAAAAAGCATTACGTAATCATGCTTTCT
CTTTGGTACTTACTGATATGCGCATGCCAGACGGATCTGGTCTGGAAATTGTAGATTATATAACCGAACACAATCTGGAT
ATTCCGATTGCTGTGATTACTGCTTACGGTAACGCAGTGCAAGCAGTGCAGGCACTAAAAAATGGTGCTTTTGATTATCT
GCAAAAACCCATTACTCTGGCACAACTACGCACATTAGTTAAATCTGTGCTGACAATCAACCATAGCTCTGATACCGACT
CCATTACTAAAGCAGCCACAAACACAAAACAATCTGAAGTGAAATCCCAGAATGTTTCTGAGTCCAGTACAAGGAACCAA
AGTGCTGCTCAAGAGCGATTGCTTGGTCACTCCCCTTTAATTGCTGAAGTGCGACAATTAATAAGCAAACTGGCTAAATC
CAATGTACCCGTTTATATTGCCGGAGAATCCGGTAGTGGAAAAGAGCAAGCAGCCCGCAGTATCCATGAACAATCAGTAC
GTAAAGATAAAGCATTTGTTGCAGTCAATTGCGGGGCGATTCCTGAAGCATTGATGGAAAGTGAGTTTTTTGGTTATAAA
AAAGGGAGTTTTACCGGCGCAGACAATGACAGGGCAGGATTTTTTCAGCATGCAGATGGTGGTACATTATTTTTGGATGA
AGTGGCTGATTTGCCATTATCCATGCAGGTAAAGCTTTTGCGTGCCATTCAGGAACGAGCTGTTCGTCGGATTGGTGAAA
TGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCTACTCATAAAGACCTGAATGCTTTGGTAGAAACGGGACAATTT
CGACAGGATTTGTTTTACCGACTAAATGTGGTGTCCATAACCATGCCCCCCTTACGTGAATTACGTGATGATTTACCAGA
ACTGATTCAGGTTTTGTTGCGACGTATTCTACGTGATGAAACCATGACTCTGAGCCCAGCAGCTGAGCAAGCTTTATTGC
AATATAGCTATCCCGGTAATTTTCGCGAGCTGGAAAATATATTAGAACGAGCAATCGCGTTATCAAAAAATCATATTATC
GAAGTTGATGATTTACAGATTCAAAGTTTCTCATTTGACAATCAGCGTAATTTATCGGCAGATAGTGTCCGTAATTCTGC
CGGGGAAAATCCTGCAAGGACAGATTTTCAGTTTGGTCATACCCAGATTCAGGACTATCTCGACGATGTAGAACGTCATA
TTCTGCAGCAGGCATTAGCACAGACCCGTTATAACCGTACACAAGCGGCAAAACTGCTGGGCATCAGCTTTAGATCAATG
CGTTATCGAATGGAACGATTGGGTATTGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (447-486)

• Response regulator receiver domain (Response_reg) (11-120)

• Sigma-54 interaction domain (Sigma54_activat) (168-333)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	49.278	98.98	0.488
pilR	Acinetobacter baumannii strain A118	41.942	98.776	0.414