Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB0R67_RS06090 Genome accession   NZ_CP160237
Coordinates   1183582..1185414 (+) Length   610 a.a.
NCBI ID   WP_335446216.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain JJ1216     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1178582..1190414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS06070 (AB0R67_06075) - 1178886..1179560 (-) 675 WP_000362604.1 TerC family protein -
  AB0R67_RS06075 (AB0R67_06080) mecA 1179906..1180589 (+) 684 WP_000350715.1 adaptor protein MecA Regulator
  AB0R67_RS06080 (AB0R67_06085) - 1180662..1182206 (+) 1545 WP_000799191.1 cardiolipin synthase -
  AB0R67_RS06085 (AB0R67_06090) - 1182287..1183531 (+) 1245 WP_098674627.1 competence protein CoiA family protein -
  AB0R67_RS06090 (AB0R67_06095) pepF 1183582..1185414 (+) 1833 WP_335446216.1 oligoendopeptidase F Regulator
  AB0R67_RS06095 (AB0R67_06100) - 1185545..1185718 (-) 174 WP_000750352.1 hypothetical protein -
  AB0R67_RS06100 (AB0R67_06105) - 1185948..1186841 (-) 894 WP_098284186.1 ClpXP adapter SpxH family protein -
  AB0R67_RS06105 (AB0R67_06110) - 1186841..1187239 (-) 399 WP_000043386.1 hypothetical protein -
  AB0R67_RS06110 (AB0R67_06115) - 1187408..1187986 (-) 579 WP_065228463.1 CYTH domain-containing protein -
  AB0R67_RS06115 (AB0R67_06120) - 1188131..1188502 (+) 372 WP_001180005.1 hypothetical protein -
  AB0R67_RS06120 (AB0R67_06125) - 1188533..1189171 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  AB0R67_RS06125 (AB0R67_06130) - 1189190..1189987 (+) 798 WP_000673192.1 NAD kinase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 70417.79 Da        Isoelectric Point: 4.6242

>NTDB_id=1020374 AB0R67_RS06090 WP_335446216.1 1183582..1185414(+) (pepF) [Bacillus thuringiensis strain JJ1216]
MSEQNKAKAKALPDRNEIEEASTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGK
LYTYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTMQTFLKENRDLSVYEHALEEITRQRPHVLS
EAEEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDPRVREDAFKAVYETYGKFKNTFA
STLSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEV
KMNVKYEEAQDLLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFG
HSVHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKK
VQEGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYIN
EFLKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=1020374 AB0R67_RS06090 WP_335446216.1 1183582..1185414(+) (pepF) [Bacillus thuringiensis strain JJ1216]
ATGTCTGAACAAAACAAAGCGAAAGCGAAAGCATTACCAGATCGCAACGAGATTGAAGAAGCAAGTACGTGGCGATTAGA
AGATATTTTCCAAACGGATGCAGAATGGGAAAAAGAATTCCAGGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTA
AAGGGAAACTTGGTGACTCTGCGGACAATTTACTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAG
CTATATACATATGCTCATATGCGTTACGATCAAGATACAACAAACTCTGTATATCAAGCATTAAATGATCGCGCAACAAA
TTTATATTCACAAGTATCTAGTAGCACAGCGTATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACAATGCAAACAT
TCTTGAAGGAAAATAGAGATTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCA
GAAGCTGAGGAGGCTTTATTAGCGGAAGCATCTGAAGTAATGAGTTCATCAAGCAATACATTCGGTATGTTGAATAACGC
GGATTTAAAATTCCCATCTATTAAAGGTGAAGACGGAGAAGAAATAGAAATTACACATGGCCGTTACATTCAGTTTTTAG
AAAGTGATGATCCTCGTGTTCGCGAAGATGCATTTAAAGCTGTATATGAAACGTATGGGAAATTTAAAAATACATTCGCA
AGTACGTTAAGTGGAGCAGTAAAACGTAATAATTTCAATGCGCGTGTTCGTAAATATGATTCTGCTCGCCAAGCTGCACT
GAGCAATAATAATATTCCGGAAGCAGTATACGATCAACTCGTTGAAACGGTAAATGACAACTTACATTTATTACACCGTT
ACATCGATATTCGTAAGCGTGCATTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTG
AAAATGAATGTGAAATACGAAGAAGCACAAGACCTTTTATTAAAATCTTTAAACGTACTTGGTGATGAATATGTTGATAT
TTTGAAAGAGGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGGGCATACTCATCTGGTG
CATATGGAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAACTTATTTACACTTGCTCATGAGTTTGGT
CATTCGGTGCATAGTTACTATACAAGAAAAACACAACCGCACGTATATGGTGATTATTCCATCTTTGTAGCAGAAGTGGC
ATCTACTTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAA
ATCATTATTTAGAAGGGTTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAACATATTATTCATAAGAAA
GTACAAGAAGGACATGCTGTTACGCCAGATATGCTAACGGAAATATACTATGATTTAAATAAGAAATATTTCGGTGACGC
TTTAGTAATCGACGAAGAGATTGGTTTAGAATGGTCTCGTATTCCACACTTCTACTACAACTATTACGTATATCAATACG
CAACAGGATTTAGTGCAGCGACTGCTCTATCTAAACAGATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAAC
GAGTTCTTAAAAGCAGGAAGCTCTGATTACCCAATTGAAGTGCTGAAAAAAGCAGGAGTAGATATGGCATCTCCTGAACC
AGTAAAAGAGGCACTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.747

97.213

0.484

Multiple sequence alignment