Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB0R69_RS16675 Genome accession   NZ_CP160234
Coordinates   3259425..3261161 (-) Length   578 a.a.
NCBI ID   WP_211064182.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3254425..3266161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS16655 (AB0R69_16665) - 3255303..3256403 (-) 1101 WP_144521056.1 Rap family tetratricopeptide repeat protein -
  AB0R69_RS16660 (AB0R69_16670) - 3256391..3256588 (-) 198 WP_041815709.1 hypothetical protein -
  AB0R69_RS16665 (AB0R69_16675) spo0A 3256860..3257663 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  AB0R69_RS16670 (AB0R69_16680) spoIVB 3257949..3259226 (-) 1278 WP_211064183.1 SpoIVB peptidase -
  AB0R69_RS16675 (AB0R69_16685) recN 3259425..3261161 (-) 1737 WP_211064182.1 DNA repair protein RecN Machinery gene
  AB0R69_RS16680 (AB0R69_16690) argR 3261195..3261644 (-) 450 WP_211064181.1 transcriptional regulator ArgR -
  AB0R69_RS16685 (AB0R69_16695) - 3262008..3262862 (-) 855 WP_144557038.1 TlyA family RNA methyltransferase -
  AB0R69_RS16690 (AB0R69_16700) dxs 3262859..3264760 (-) 1902 WP_211064180.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB0R69_RS16695 (AB0R69_16705) - 3264911..3265801 (-) 891 WP_211064179.1 polyprenyl synthetase family protein -
  AB0R69_RS16700 (AB0R69_16710) - 3265791..3266051 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64836.62 Da        Isoelectric Point: 4.7788

>NTDB_id=1020344 AB0R69_RS16675 WP_211064182.1 3259425..3261161(-) (recN) [Bacillus pumilus strain JJ1368]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDASDEMMILRRDMNNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRGMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDTHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPYSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVATGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1020344 AB0R69_RS16675 WP_211064182.1 3259425..3261161(-) (recN) [Bacillus pumilus strain JJ1368]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGACGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTTGAAGGGCTTTTTCTTGTACCAGCAGCTGATCACCCTGTATTCGCTTTA
TGTGAGGAGCAGGGAATTGACGCATCGGATGAAATGATGATTCTTCGCCGTGATATGAACAATAACGGGAAAAGCATCTG
CCGCATCAATGGCAAGCTCGTCACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAACCATCTGCATTTGCTCGATCAATTTGGTGCAGAAGAAATTGCACCTGCTTTG
TCGCAGTATCAAGAAGCATATGAGCAATACACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAAGCGGCGCAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAACAGGGGGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTGGAGCAAGTTTCTGAGATCAACGACGATCTGAAAAA
GCTATCCGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCGACGTTCCAAATGCGGGGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGTCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAACAGTTAAAGCGGAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACACTCATCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCACTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTATATATGGAGAAGTCAACGTTTGATACATCCTTTTCC
ATTCGATATGCGCCTTATAGCAGCACAGATAATCCGCTCCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATTGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTAGCCTCTGGTGGAGAAATTT
CACGAGTCATGCTCGCCGTGAAAAGTATCTTCTCAGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGACTGGCTCACAAGTGCTTTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCAAAACGCTCTAAAGCTGGTAGAACACTGACAA
GTGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGAATGATTGCGGGGGTGGAAGTGACTGAGTTGACA
AAACAGCATGCAAAAGAATTGCTCCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.913

100

0.749

Multiple sequence alignment