Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB0R69_RS16665 Genome accession   NZ_CP160234
Coordinates   3256860..3257663 (-) Length   267 a.a.
NCBI ID   WP_012010520.1    Uniprot ID   W6IDW7
Organism   Bacillus pumilus strain JJ1368     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3251860..3262663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R69_RS16645 (AB0R69_16655) - 3254069..3254305 (+) 237 WP_003215815.1 DUF2627 domain-containing protein -
  AB0R69_RS16650 (AB0R69_16660) - 3254340..3255077 (-) 738 WP_335349186.1 glycerophosphodiester phosphodiesterase -
  AB0R69_RS16655 (AB0R69_16665) - 3255303..3256403 (-) 1101 WP_144521056.1 Rap family tetratricopeptide repeat protein -
  AB0R69_RS16660 (AB0R69_16670) - 3256391..3256588 (-) 198 WP_041815709.1 hypothetical protein -
  AB0R69_RS16665 (AB0R69_16675) spo0A 3256860..3257663 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  AB0R69_RS16670 (AB0R69_16680) spoIVB 3257949..3259226 (-) 1278 WP_211064183.1 SpoIVB peptidase -
  AB0R69_RS16675 (AB0R69_16685) recN 3259425..3261161 (-) 1737 WP_211064182.1 DNA repair protein RecN Machinery gene
  AB0R69_RS16680 (AB0R69_16690) argR 3261195..3261644 (-) 450 WP_211064181.1 transcriptional regulator ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3913

>NTDB_id=1020343 AB0R69_RS16665 WP_012010520.1 3256860..3257663(-) (spo0A) [Bacillus pumilus strain JJ1368]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1020343 AB0R69_RS16665 WP_012010520.1 3256860..3257663(-) (spo0A) [Bacillus pumilus strain JJ1368]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATCGAGGGACAGGA
AGATATGGAAGTGCTAGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGATGGCCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACAGCGTTTGGACAAGAAGATGTGACGAAAAAAGCAGTGGATTTGGGCGCATCTTATTTCAT
TTTAAAGCCATTTGATATGGAAAACTTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTTCTTCGAAATAAACCTGAGCCGAAACGTAAAAACTTAGATGCAAGCATTACGACGATT
ATTCATGAGATTGGCGTACCCGCCCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGACAT
CGAACTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATTGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GGGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATCGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCGGAATTTATCGCAATGGTGGCTGATCGTCTACGCTTGGAACATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6IDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888

Multiple sequence alignment