Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R75_RS14545 Genome accession   NZ_CP160232
Coordinates   2838583..2839224 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus strain JJ1622     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833583..2844224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R75_RS14510 (AB0R75_14510) - 2834717..2835148 (+) 432 WP_044140818.1 Na(+)/H(+) antiporter subunit B -
  AB0R75_RS14515 (AB0R75_14515) - 2835148..2835489 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AB0R75_RS14520 (AB0R75_14520) - 2835482..2836960 (+) 1479 WP_335349072.1 Na+/H+ antiporter subunit D -
  AB0R75_RS14525 (AB0R75_14525) - 2836967..2837446 (+) 480 WP_003213059.1 Na+/H+ antiporter subunit E -
  AB0R75_RS14530 (AB0R75_14530) - 2837446..2837727 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R75_RS14535 (AB0R75_14535) mnhG 2837711..2838085 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AB0R75_RS14540 (AB0R75_14540) - 2838170..2838559 (-) 390 WP_211064043.1 hotdog fold thioesterase -
  AB0R75_RS14545 (AB0R75_14545) comA 2838583..2839224 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  AB0R75_RS14550 (AB0R75_14550) comP 2839305..2841611 (-) 2307 WP_211064042.1 ATP-binding protein Regulator
  AB0R75_RS14555 (AB0R75_14555) comX 2841625..2841804 (-) 180 WP_313960228.1 competence pheromone ComX -
  AB0R75_RS14560 (AB0R75_14560) - 2841773..2842696 (-) 924 WP_144522309.1 polyprenyl synthetase family protein -
  AB0R75_RS14565 (AB0R75_14565) degQ 2842848..2842988 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AB0R75_RS14570 (AB0R75_14570) - 2843536..2843847 (+) 312 WP_213019770.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=1020281 AB0R75_RS14545 WP_003213500.1 2838583..2839224(-) (comA) [Bacillus pumilus strain JJ1622]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1020281 AB0R75_RS14545 WP_003213500.1 2838583..2839224(-) (comA) [Bacillus pumilus strain JJ1622]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATTTTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTTGATGATTATTTTGAAGAAGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTCTGATC
CTGAGAGAAGTGGAAAAAGGATACACAAACCAAGAGATTGCCGACGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATTTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment