Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   AB0R75_RS06475 Genome accession   NZ_CP160232
Coordinates   1310116..1312218 (-) Length   700 a.a.
NCBI ID   WP_335349236.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1622     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305116..1317218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R75_RS06450 (AB0R75_06450) - 1305706..1305948 (+) 243 WP_144468509.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AB0R75_RS06455 (AB0R75_06455) - 1305996..1307501 (-) 1506 WP_211063053.1 ATP-binding protein -
  AB0R75_RS06460 (AB0R75_06460) - 1307705..1308160 (+) 456 WP_003211701.1 MarR family transcriptional regulator -
  AB0R75_RS06465 (AB0R75_06465) motB 1308190..1308954 (-) 765 WP_335349235.1 flagellar motor protein MotB -
  AB0R75_RS06470 (AB0R75_06470) motA 1308947..1309741 (-) 795 WP_003212085.1 flagellar motor stator protein MotA -
  AB0R75_RS06475 (AB0R75_06475) clpC 1310116..1312218 (-) 2103 WP_335349236.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AB0R75_RS06480 (AB0R75_06480) - 1312464..1313507 (+) 1044 WP_211063050.1 hypothetical protein -
  AB0R75_RS06485 (AB0R75_06485) queC 1313782..1314438 (+) 657 WP_012009745.1 7-cyano-7-deazaguanine synthase QueC -
  AB0R75_RS06490 (AB0R75_06490) queD 1314439..1314879 (+) 441 WP_335349237.1 6-carboxytetrahydropterin synthase QueD -
  AB0R75_RS06495 (AB0R75_06495) queE 1314872..1315603 (+) 732 WP_211063048.1 7-carboxy-7-deazaguanine synthase QueE -
  AB0R75_RS06500 (AB0R75_06500) queF 1315619..1316116 (+) 498 WP_003211403.1 preQ(1) synthase -
  AB0R75_RS06505 (AB0R75_06505) - 1316523..1316741 (+) 219 WP_211063047.1 hypothetical protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 78243.94 Da        Isoelectric Point: 5.1280

>NTDB_id=1020257 AB0R75_RS06475 WP_335349236.1 1310116..1312218(-) (clpC) [Bacillus pumilus strain JJ1622]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHTQNVEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQNRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQVEAIEILKGIQDKYEIYHGITYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLREIAAEKQAALKEEQYEKAAKLRDEEETIEARLQNKTNDKEHVVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSREAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSTYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLHELSEQLKEQNLTVHVT
NKAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLDEEKLSGFTVDVEDNEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=1020257 AB0R75_RS06475 WP_335349236.1 1310116..1312218(-) (clpC) [Bacillus pumilus strain JJ1622]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCATCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGAGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATACGCAAAACGTAGAGCAACCAAAACAAAAAGGCTTACTCGATGAACTTGGCCGCAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTTGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTTGCAC
TGAAAATTGCAAGTGGCGATGTCCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCTTCCCTTGTAGCG
AATACAGGAATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAACCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCACCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCAACGACATTAAAAGAATATCGTCAAATTGAAAAAGACGCCGCACTT
GAACGACGCTTCCAGCCCGTCATTGTAGATGAGCCAACACAAGTTGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAATCTATCATGGCATCACTTATTCAGACGAAGCCATTCAAGCATGTGTTCAATTATCTTCCCGATATATTCAAG
ATCGCCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATCGATGCAGCAAGT
GAAGATGAACTAACAAATCGCCTGAGAGAAATTGCTGCTGAAAAACAGGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAACCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGATATTCAAGCCATTGTCGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGAGTGATCGGCCAGGAACATGCGGTTGAAAAAGTGGCAAAAGCTGTGAAGAG
AAGCAGAGCCGGCTTAAAATCAAAACATAGACCAACTGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTTGGTTCGCGAGAGGCGATTATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCTAAGCTCATCGGTTCTCCTCCTGGGTATGTTGGACATGATGAAGCGGGTCAACTAACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCTGATGTGCAGCACATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATTATCATGACAAGTAAC
GCAGGAAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCAATTGAGGAACAATCACTCATTGA
TTCACTCAGCACCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATCGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCCATGAGCTTTCAGAACAATTAAAAGAGCAAAATTTAACCGTCCATGTGACA
AATAAAGCGAAAGAAAAAATTGCAGAACTTGGATATCACCCTGCATTTGGTGCTCGTCCACTACGAAGAACCATTCAAGA
GCACGTTGAAGATCAAATGACGGAGATATTGCTTGACGAAGAAAAACTTTCAGGATTTACTGTAGATGTTGAAGATAACG
AAATTGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

AAA lid domain (AAA_lid_9)

(254-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.233

100

0.593
  clpE Streptococcus mutans UA159

57.044

100

0.59
  clpE Streptococcus pneumoniae Rx1

55.11

100

0.57
  clpE Streptococcus pneumoniae D39

55.11

100

0.57
  clpE Streptococcus pneumoniae R6

55.11

100

0.57
  clpE Streptococcus pneumoniae TIGR4

55.11

100

0.57
  clpC Bacillus subtilis subsp. subtilis str. 168

53.582

95.714

0.513
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.698

90.857

0.424
  clpC Streptococcus thermophilus LMD-9

45.75

92.429

0.423
  clpC Streptococcus thermophilus LMG 18311

45.595

92.429

0.421
  clpC Streptococcus mutans UA159

43.865

93.143

0.409
  clpC Streptococcus pneumoniae TIGR4

44.795

90.571

0.406
  clpC Streptococcus pneumoniae Rx1

44.992

89.857

0.404
  clpC Streptococcus pneumoniae D39

44.992

89.857

0.404
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.708

87

0.363

Multiple sequence alignment