Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R72_RS16690 Genome accession   NZ_CP160229
Coordinates   3355430..3356074 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain AP46     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350430..3361074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R72_RS16655 (AB0R72_16660) - 3351615..3352046 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  AB0R72_RS16660 (AB0R72_16665) - 3352046..3352387 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AB0R72_RS16665 (AB0R72_16670) - 3352380..3353861 (+) 1482 WP_042635451.1 Na+/H+ antiporter subunit D -
  AB0R72_RS16670 (AB0R72_16675) - 3353867..3354343 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  AB0R72_RS16675 (AB0R72_16680) - 3354343..3354627 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R72_RS16680 (AB0R72_16685) mnhG 3354611..3354985 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AB0R72_RS16685 (AB0R72_16690) - 3355025..3355408 (-) 384 WP_327942488.1 hotdog fold thioesterase -
  AB0R72_RS16690 (AB0R72_16695) comA 3355430..3356074 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  AB0R72_RS16695 (AB0R72_16700) comP 3356155..3358464 (-) 2310 WP_033574914.1 histidine kinase Regulator
  AB0R72_RS16700 (AB0R72_16705) comX 3358484..3358660 (-) 177 WP_007408675.1 competence pheromone ComX -
  AB0R72_RS16705 (AB0R72_16710) comQ 3358660..3359544 (-) 885 WP_061862640.1 class 1 isoprenoid biosynthesis enzyme Regulator
  AB0R72_RS16710 (AB0R72_16715) degQ 3359729..3359869 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AB0R72_RS16715 (AB0R72_16720) - 3360332..3360673 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1020218 AB0R72_RS16690 WP_003152052.1 3355430..3356074(-) (comA) [Bacillus velezensis strain AP46]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1020218 AB0R72_RS16690 WP_003152052.1 3355430..3356074(-) (comA) [Bacillus velezensis strain AP46]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCTATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment