Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB0R86_RS17870 Genome accession   NZ_CP160227
Coordinates   3607887..3608006 (+) Length   39 a.a.
NCBI ID   WP_041482476.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ947     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3602887..3613006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R86_RS17850 (AB0R86_17850) - 3603237..3603749 (+) 513 Protein_3454 bacteriocin biosynthesis protein AlbG -
  AB0R86_RS17855 (AB0R86_17855) - 3603756..3605132 (-) 1377 WP_072589671.1 YncE family protein -
  AB0R86_RS17860 (AB0R86_17860) - 3605172..3606527 (-) 1356 WP_335395029.1 YncE family protein -
  AB0R86_RS17865 (AB0R86_17865) rapF 3606758..3607903 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  AB0R86_RS17870 (AB0R86_17870) phrF 3607887..3608006 (+) 120 WP_041482476.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AB0R86_RS17875 (AB0R86_17875) - 3608204..3608407 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  AB0R86_RS17880 (AB0R86_17880) - 3608421..3608624 (+) 204 WP_007407641.1 hypothetical protein -
  AB0R86_RS17885 (AB0R86_17885) - 3608659..3608844 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  AB0R86_RS17890 (AB0R86_17890) - 3609030..3609311 (+) 282 WP_007407643.1 hypothetical protein -
  AB0R86_RS17895 (AB0R86_17895) - 3609355..3609867 (+) 513 WP_335395027.1 stage II sporulation protein M -
  AB0R86_RS17900 (AB0R86_17900) - 3610458..3610676 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  AB0R86_RS17905 (AB0R86_17905) speB 3610844..3611716 (-) 873 WP_007614448.1 agmatinase -
  AB0R86_RS17910 (AB0R86_17910) speE 3611775..3612605 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4267.13 Da        Isoelectric Point: 10.0233

>NTDB_id=1020155 AB0R86_RS17870 WP_041482476.1 3607887..3608006(+) (phrF) [Bacillus velezensis strain JJ947]
MKLKYKLALTCLAVSTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1020155 AB0R86_RS17870 WP_041482476.1 3607887..3608006(+) (phrF) [Bacillus velezensis strain JJ947]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment