Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB0R77_RS11605 Genome accession   NZ_CP160226
Coordinates   2255439..2255774 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1244     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2250439..2260774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS11585 (AB0R77_11585) gcvT 2250916..2252013 (-) 1098 WP_046311744.1 glycine cleavage system aminomethyltransferase GcvT -
  AB0R77_RS11590 (AB0R77_11590) - 2252575..2254245 (+) 1671 WP_034280230.1 SNF2-related protein -
  AB0R77_RS11595 (AB0R77_11595) - 2254260..2255057 (+) 798 WP_034280228.1 YqhG family protein -
  AB0R77_RS11600 (AB0R77_11600) - 2255241..2255405 (+) 165 WP_075623492.1 anti-repressor SinI family protein -
  AB0R77_RS11605 (AB0R77_11605) sinR 2255439..2255774 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  AB0R77_RS11610 (AB0R77_11610) tasA 2255842..2256642 (-) 801 WP_034280222.1 biofilm matrix protein TasA -
  AB0R77_RS11615 (AB0R77_11615) sipW 2256700..2257272 (-) 573 WP_034280218.1 signal peptidase I SipW -
  AB0R77_RS11620 (AB0R77_11620) tapA 2257325..2257852 (-) 528 WP_046311747.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R77_RS11625 (AB0R77_11625) - 2258152..2258430 (+) 279 WP_061109527.1 DUF3889 domain-containing protein -
  AB0R77_RS11630 (AB0R77_11630) - 2258465..2258659 (-) 195 WP_046311750.1 YqzE family protein -
  AB0R77_RS11635 (AB0R77_11635) comGG 2258719..2259102 (-) 384 WP_041117969.1 competence type IV pilus minor pilin ComGG -
  AB0R77_RS11640 (AB0R77_11640) comGF 2259099..2259626 (-) 528 WP_259407219.1 competence type IV pilus minor pilin ComGF -
  AB0R77_RS11645 (AB0R77_11645) comGE 2259538..2259852 (-) 315 WP_041106865.1 competence type IV pilus minor pilin ComGE -
  AB0R77_RS11650 (AB0R77_11650) comGD 2259836..2260282 (-) 447 WP_046311754.1 competence type IV pilus minor pilin ComGD -
  AB0R77_RS11655 (AB0R77_11655) comGC 2260275..2260568 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=1020056 AB0R77_RS11605 WP_024422969.1 2255439..2255774(+) (sinR) [Bacillus safensis strain JJ1244]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1020056 AB0R77_RS11605 WP_024422969.1 2255439..2255774(+) (sinR) [Bacillus safensis strain JJ1244]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment