Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB0R87_RS11675 Genome accession   NZ_CP160224
Coordinates   2303240..2304010 (-) Length   256 a.a.
NCBI ID   WP_113387154.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2298240..2309010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS11655 (AB0R87_11655) - 2298333..2299154 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  AB0R87_RS11660 (AB0R87_11660) - 2299180..2299818 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  AB0R87_RS11665 (AB0R87_11665) glyS 2299985..2302030 (-) 2046 WP_212045898.1 glycine--tRNA ligase subunit beta -
  AB0R87_RS11670 (AB0R87_11670) glyQ 2302023..2302910 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  AB0R87_RS11675 (AB0R87_11675) recO 2303240..2304010 (-) 771 WP_113387154.1 DNA repair protein RecO Machinery gene
  AB0R87_RS11680 (AB0R87_11680) - 2304046..2304189 (-) 144 WP_003217288.1 YqzL family protein -
  AB0R87_RS11685 (AB0R87_11685) era 2304338..2305243 (-) 906 WP_003217394.1 GTPase Era -
  AB0R87_RS11690 (AB0R87_11690) - 2305236..2305634 (-) 399 WP_003217296.1 cytidine deaminase -
  AB0R87_RS11695 (AB0R87_11695) - 2305748..2306134 (-) 387 WP_003217363.1 diacylglycerol kinase family protein -
  AB0R87_RS11700 (AB0R87_11700) ybeY 2306112..2306591 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  AB0R87_RS11705 (AB0R87_11705) - 2306592..2308679 (-) 2088 WP_212046021.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29262.96 Da        Isoelectric Point: 8.4348

>NTDB_id=1019922 AB0R87_RS11675 WP_113387154.1 2303240..2304010(-) (recO) [Bacillus pumilus strain JJ950]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKMPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1019922 AB0R87_RS11675 WP_113387154.1 2303240..2304010(-) (recO) [Bacillus pumilus strain JJ950]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGTACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGTTTTTCTAAAGATCCGTATAAAATGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment