Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DQL02_RS08770 Genome accession   NZ_LS483355
Coordinates   1736346..1737452 (+) Length   368 a.a.
NCBI ID   WP_053039079.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12067     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731346..1742452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL02_RS08745 (NCTC12067_01734) hasA 1732177..1733283 (+) 1107 Protein_1622 hyaluronan synthase HasA -
  DQL02_RS08750 (NCTC12067_01735) hasB 1733319..1734527 (+) 1209 WP_002991442.1 UDP-glucose 6-dehydrogenase HasB -
  DQL02_RS08760 (NCTC12067_01736) hasC 1734709..1735623 (+) 915 WP_002982024.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  DQL02_RS08765 (NCTC12067_01737) yaaA 1735931..1736344 (+) 414 WP_053039078.1 S4 domain-containing protein YaaA -
  DQL02_RS08770 (NCTC12067_01738) recF 1736346..1737452 (+) 1107 WP_053039079.1 DNA replication/repair protein RecF Machinery gene
  DQL02_RS08775 (NCTC12067_01739) - 1737509..1738372 (-) 864 WP_002992310.1 GRP family sugar transporter -
  DQL02_RS08780 (NCTC12067_01740) guaB 1738574..1740055 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  DQL02_RS08785 (NCTC12067_01741) trpS 1740363..1741385 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41713.65 Da        Isoelectric Point: 8.9543

>NTDB_id=1019922 DQL02_RS08770 WP_053039079.1 1736346..1737452(+) (recF) [Streptococcus pyogenes strain NCTC12067]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKALIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNQQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=1019922 DQL02_RS08770 WP_053039079.1 1736346..1737452(+) (recF) [Streptococcus pyogenes strain NCTC12067]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGCATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCAGCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.187

100

0.459

Multiple sequence alignment