Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQL39_RS02540 Genome accession   NZ_LS483353
Coordinates   473932..474528 (+) Length   198 a.a.
NCBI ID   WP_011888787.1    Uniprot ID   A2RDV9
Organism   Streptococcus pyogenes strain NCTC4001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 468932..479528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS02510 (NCTC4001_00496) - 469040..469975 (-) 936 WP_010922443.1 dihydroorotate oxidase -
  DQL39_RS02515 (NCTC4001_00497) - 470214..470909 (+) 696 WP_002983928.1 phosphoglycerate mutase -
  DQL39_RS02520 (NCTC4001_00498) - 471016..471537 (+) 522 WP_011017960.1 transcription repressor NadR -
  DQL39_RS02525 (NCTC4001_00499) - 471698..472240 (+) 543 WP_011017959.1 hypothetical protein -
  DQL39_RS02530 (NCTC4001_00500) - 472364..473143 (+) 780 WP_038433256.1 formate/nitrite transporter family protein -
  DQL39_RS09340 - 473703..473885 (+) 183 WP_011888786.1 penicillin-binding protein -
  DQL39_RS02540 (NCTC4001_00501) recR 473932..474528 (+) 597 WP_011888787.1 recombination mediator RecR Machinery gene
  DQL39_RS02545 (NCTC4001_00502) - 474629..475675 (+) 1047 WP_011017958.1 D-alanine--D-alanine ligase -
  DQL39_RS02550 (NCTC4001_00503) - 475874..477265 (+) 1392 WP_010922441.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQL39_RS02555 (NCTC4001_00504) - 477345..478040 (+) 696 WP_038433259.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21695.89 Da        Isoelectric Point: 4.8889

>NTDB_id=1019766 DQL39_RS02540 WP_011888787.1 473932..474528(+) (recR) [Streptococcus pyogenes strain NCTC4001]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYRGYYHVLHGLISPMNGMGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1019766 DQL39_RS02540 WP_011888787.1 473932..474528(+) (recR) [Streptococcus pyogenes strain NCTC4001]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAATTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCGTGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTATGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5

Multiple sequence alignment