Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R82_RS18165 Genome accession   NZ_CP160220
Coordinates   3515702..3516391 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain JM553     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3510702..3521391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS18130 (AB0R82_18130) flgN 3510883..3511365 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AB0R82_RS18135 (AB0R82_18135) flgM 3511381..3511647 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R82_RS18140 (AB0R82_18140) yvyF 3511728..3512147 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AB0R82_RS18145 (AB0R82_18145) comFC 3512220..3512942 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  AB0R82_RS18150 (AB0R82_18150) comFB 3512906..3513202 (-) 297 WP_015483764.1 late competence protein ComFB -
  AB0R82_RS18155 (AB0R82_18155) comFA 3513262..3514653 (-) 1392 WP_198878462.1 ATP-dependent helicase ComFA Machinery gene
  AB0R82_RS18160 (AB0R82_18160) fakBA 3514759..3515604 (-) 846 WP_003244125.1 DegV family protein -
  AB0R82_RS18165 (AB0R82_18165) degU 3515702..3516391 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R82_RS18170 (AB0R82_18170) degS 3516474..3517631 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AB0R82_RS18175 (AB0R82_18175) yvyE 3517848..3518501 (+) 654 WP_003227979.1 YigZ family protein -
  AB0R82_RS18180 (AB0R82_18180) tagV 3518501..3519676 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AB0R82_RS18185 (AB0R82_18185) tagO 3519749..3520825 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1019724 AB0R82_RS18165 WP_003219701.1 3515702..3516391(-) (degU) [Bacillus subtilis strain JM553]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1019724 AB0R82_RS18165 WP_003219701.1 3515702..3516391(-) (degU) [Bacillus subtilis strain JM553]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment