Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AB0R82_RS18145 Genome accession   NZ_CP160220
Coordinates   3512220..3512942 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507220..3517942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS18110 (AB0R82_18110) fliW 3507360..3507791 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  AB0R82_RS18115 (AB0R82_18115) yviE 3507812..3508387 (-) 576 WP_198878463.1 DUF6470 family protein -
  AB0R82_RS18120 (AB0R82_18120) flgL 3508434..3509330 (-) 897 WP_106073351.1 flagellar hook-associated protein FlgL -
  AB0R82_RS18125 (AB0R82_18125) flgK 3509341..3510864 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  AB0R82_RS18130 (AB0R82_18130) flgN 3510883..3511365 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AB0R82_RS18135 (AB0R82_18135) flgM 3511381..3511647 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R82_RS18140 (AB0R82_18140) yvyF 3511728..3512147 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AB0R82_RS18145 (AB0R82_18145) comFC 3512220..3512942 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  AB0R82_RS18150 (AB0R82_18150) comFB 3512906..3513202 (-) 297 WP_015483764.1 late competence protein ComFB -
  AB0R82_RS18155 (AB0R82_18155) comFA 3513262..3514653 (-) 1392 WP_198878462.1 ATP-dependent helicase ComFA Machinery gene
  AB0R82_RS18160 (AB0R82_18160) fakBA 3514759..3515604 (-) 846 WP_003244125.1 DegV family protein -
  AB0R82_RS18165 (AB0R82_18165) degU 3515702..3516391 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AB0R82_RS18170 (AB0R82_18170) degS 3516474..3517631 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=1019722 AB0R82_RS18145 WP_029725992.1 3512220..3512942(-) (comFC) [Bacillus subtilis strain JM553]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1019722 AB0R82_RS18145 WP_029725992.1 3512220..3512942(-) (comFC) [Bacillus subtilis strain JM553]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment