Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R82_RS16160 Genome accession   NZ_CP160220
Coordinates   3114828..3115472 (-) Length   214 a.a.
NCBI ID   WP_366591747.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3109828..3120472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS16125 (AB0R82_16125) mrpB 3111020..3111451 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  AB0R82_RS16130 (AB0R82_16130) mrpC 3111451..3111792 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AB0R82_RS16135 (AB0R82_16135) mrpD 3111785..3113266 (+) 1482 WP_204551362.1 Na+/H+ antiporter subunit D -
  AB0R82_RS16140 (AB0R82_16140) mrpE 3113272..3113748 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AB0R82_RS16145 (AB0R82_16145) mrpF 3113748..3114032 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R82_RS16150 (AB0R82_16150) mnhG 3114016..3114390 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  AB0R82_RS16155 (AB0R82_16155) yuxO 3114429..3114809 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  AB0R82_RS16160 (AB0R82_16160) comA 3114828..3115472 (-) 645 WP_366591747.1 two-component system response regulator ComA Regulator
  AB0R82_RS16165 (AB0R82_16165) comP 3115553..3117865 (-) 2313 WP_077671126.1 histidine kinase Regulator
  AB0R82_RS16170 (AB0R82_16170) comX 3117881..3118102 (-) 222 WP_014480704.1 competence pheromone ComX -
  AB0R82_RS16175 (AB0R82_16175) - 3118104..3118967 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  AB0R82_RS16180 (AB0R82_16180) degQ 3119152..3119292 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AB0R82_RS16185 (AB0R82_16185) - 3119514..3119639 (+) 126 WP_121549029.1 hypothetical protein -
  AB0R82_RS16190 (AB0R82_16190) - 3119754..3120122 (+) 369 WP_038427878.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24118.47 Da        Isoelectric Point: 4.6857

>NTDB_id=1019717 AB0R82_RS16160 WP_366591747.1 3114828..3115472(-) (comA) [Bacillus subtilis strain JM553]
MKKILVIDDHSAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1019717 AB0R82_RS16160 WP_366591747.1 3114828..3115472(-) (comA) [Bacillus subtilis strain JM553]
ATGAAAAAGATACTAGTGATTGATGACCATTCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTTGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995

Multiple sequence alignment