Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DQM92_RS07880 Genome accession   NZ_LS483350
Coordinates   1575998..1576450 (-) Length   150 a.a.
NCBI ID   WP_111724816.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC11940     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570998..1581450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM92_RS07850 (NCTC11940_01471) gcvPA 1571248..1572594 (-) 1347 WP_000019684.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DQM92_RS07855 (NCTC11940_01472) gcvT 1572614..1573705 (-) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  DQM92_RS07860 - 1573864..1574388 (-) 525 WP_001015117.1 shikimate kinase -
  DQM92_RS07865 - 1574378..1574524 (-) 147 WP_001789879.1 hypothetical protein -
  DQM92_RS07875 (NCTC11940_01474) - 1574748..1575920 (-) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  DQM92_RS07880 (NCTC11940_01475) comGF 1575998..1576450 (-) 453 WP_111724816.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM92_RS07885 (NCTC11940_01476) comGE 1576368..1576667 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  DQM92_RS07890 (NCTC11940_01477) comGD 1576654..1577100 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQM92_RS07895 (NCTC11940_01478) comGC 1577078..1577389 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM92_RS07900 (NCTC11940_01479) comGB 1577403..1578473 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM92_RS07905 (NCTC11940_01480) comGA 1578445..1579419 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM92_RS07910 (NCTC11940_01481) - 1579471..1580094 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DQM92_RS07915 (NCTC11940_01482) - 1580091..1580420 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DQM92_RS07920 (NCTC11940_01483) - 1580420..1581406 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17635.04 Da        Isoelectric Point: 10.0697

>NTDB_id=1019506 DQM92_RS07880 WP_111724816.1 1575998..1576450(-) (comGF) [Staphylococcus aureus strain NCTC11940]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMFISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKDKVRIIV

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1019506 DQM92_RS07880 WP_111724816.1 1575998..1576450(-) (comGF) [Staphylococcus aureus strain NCTC11940]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGTTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAAGATAAAGTCCGTATAATTGTGTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(66-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

95.333

100

0.953
  comGF Staphylococcus aureus N315

92

100

0.92

Multiple sequence alignment