Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   AB0R90_RS02070 Genome accession   NZ_CP160217
Coordinates   410383..410502 (+) Length   39 a.a.
NCBI ID   WP_033575081.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP52     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 405383..415502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R90_RS02055 (AB0R90_02055) - 406995..407678 (+) 684 WP_007410267.1 response regulator transcription factor -
  AB0R90_RS02060 (AB0R90_02060) - 407665..409098 (+) 1434 WP_162992601.1 HAMP domain-containing sensor histidine kinase -
  AB0R90_RS02065 (AB0R90_02065) rapC 409251..410399 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  AB0R90_RS02070 (AB0R90_02070) phrC 410383..410502 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AB0R90_RS02075 (AB0R90_02075) - 410651..410746 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  AB0R90_RS02080 (AB0R90_02080) - 410841..412205 (-) 1365 WP_020955323.1 aspartate kinase -
  AB0R90_RS02085 (AB0R90_02085) ceuB 412619..413572 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  AB0R90_RS02090 (AB0R90_02090) - 413562..414509 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  AB0R90_RS02095 (AB0R90_02095) - 414503..415261 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4214.93 Da        Isoelectric Point: 8.0284

>NTDB_id=1019438 AB0R90_RS02070 WP_033575081.1 410383..410502(+) (phrC) [Bacillus velezensis strain AP52]
MKLKSKWFVICLAAAAIFTVTGAGQTDQADFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1019438 AB0R90_RS02070 WP_033575081.1 410383..410502(+) (phrC) [Bacillus velezensis strain AP52]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGACTTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

72.5

100

0.744

Multiple sequence alignment