Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB0R81_RS14940 Genome accession   NZ_CP160215
Coordinates   3042074..3042718 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain JJ213     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037074..3047718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R81_RS14905 (AB0R81_14905) - 3038259..3038690 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  AB0R81_RS14910 (AB0R81_14910) - 3038690..3039031 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AB0R81_RS14915 (AB0R81_14915) - 3039024..3040505 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  AB0R81_RS14920 (AB0R81_14920) - 3040511..3040987 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  AB0R81_RS14925 (AB0R81_14925) - 3040987..3041271 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  AB0R81_RS14930 (AB0R81_14930) mnhG 3041255..3041629 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AB0R81_RS14935 (AB0R81_14935) - 3041669..3042052 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  AB0R81_RS14940 (AB0R81_14940) comA 3042074..3042718 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  AB0R81_RS14945 (AB0R81_14945) comP 3042799..3045105 (-) 2307 WP_094032817.1 sensor histidine kinase Regulator
  AB0R81_RS14950 (AB0R81_14950) comX 3045124..3045300 (-) 177 WP_015240484.1 competence pheromone ComX -
  AB0R81_RS14955 (AB0R81_14955) - 3045315..3046190 (-) 876 WP_366573181.1 polyprenyl synthetase family protein -
  AB0R81_RS14960 (AB0R81_14960) degQ 3046342..3046482 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AB0R81_RS14965 (AB0R81_14965) - 3046948..3047289 (+) 342 WP_007613435.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1019335 AB0R81_RS14940 WP_003152052.1 3042074..3042718(-) (comA) [Bacillus velezensis strain JJ213]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1019335 AB0R81_RS14940 WP_003152052.1 3042074..3042718(-) (comA) [Bacillus velezensis strain JJ213]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAACGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment